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The map label for this gene is rimN [H]

Identifier: 119773191

GI number: 119773191

Start: 51951

End: 52523

Strand: Direct

Name: rimN [H]

Synonym: Sama_0049

Alternate gene names: 119773191

Gene position: 51951-52523 (Clockwise)

Preceding gene: 119773190

Following gene: 119773192

Centisome position: 1.21

GC content: 50.61

Gene sequence:

>573_bases
ATGACTTTAATGTTGCAGGTAACTCCCTCTCAAATCAGTGGCATCATCGAAAGTGGCGGCGTTGTGGCCTATCCCACAGA
GGCCGTATATGGTTTGGGATGCGATCCGGACAACGATACCGCTATACAAAAGCTCTTGGCAGTAAAGCAGCGCCCTTGGG
AAAAAGGTTTAATTCTGATTGCCAGCAGCTTTGACCAGCTGAAACCCTATATTGACTTAAGTCGGGTGACCGAGGCCCAG
TTACAGGCTGCATTTGATAAATGGCCAGGCCCTTTTACCTTTGTCATTCCCGCGAAAGCCGATGTATCGCCTATGCTCAG
GGGCTGCTTTGATACCATTGCCGTTAGGGTGTCGGCCCATCAGGACGTACGTGCCATGTGTTATGCCTGCCAAAAACCGC
TGGTATCCACCAGTGCCAACTTGGCAGGGGAACAGCCAGCCCTGACATTGGCTGAAGTTCAAACTCAGCTGGGTGATAAA
ATCGACGCCGTGGTGTTGGGAGCGCTGGGGCAATCTTGTCAGCCATCCACCATTATCGATATTCAAACCGGACATATTTT
CAGACAAGGATAA

Upstream 100 bases:

>100_bases
TGAGCCAGGCCGCATTTCTTTAAGCTTGCCAGCCGTGTCGTTATACTGAACATCCTGCCGGGTAGTCAGGGCCATTGGCG
CGAATTTTCATGTCTTCGAG

Downstream 100 bases:

>100_bases
GAAGGAAAACAGCATGGGACTTCCCAACGCCGAAGAGGTAAAAGCGTTTTTAATGCAGCTGCAGGCTAACATCTGCGCTG
GCCTGGAAAGGCTGGATGGT

Product: SUA5/YciO/YrdC-like protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MTLMLQVTPSQISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSRVTEAQ
LQAAFDKWPGPFTFVIPAKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKPLVSTSANLAGEQPALTLAEVQTQLGDK
IDAVVLGALGQSCQPSTIIDIQTGHIFRQG

Sequences:

>Translated_190_residues
MTLMLQVTPSQISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSRVTEAQ
LQAAFDKWPGPFTFVIPAKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKPLVSTSANLAGEQPALTLAEVQTQLGDK
IDAVVLGALGQSCQPSTIIDIQTGHIFRQG
>Mature_189_residues
TLMLQVTPSQISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSRVTEAQL
QAAFDKWPGPFTFVIPAKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKPLVSTSANLAGEQPALTLAEVQTQLGDKI
DAVVLGALGQSCQPSTIIDIQTGHIFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=176, Percent_Identity=52.8409090909091, Blast_Score=184, Evalue=3e-48,
Organism=Escherichia coli, GI87081864, Length=186, Percent_Identity=27.9569892473118, Blast_Score=78, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321269, Length=185, Percent_Identity=31.3513513513514, Blast_Score=73, Evalue=3e-14,
Organism=Drosophila melanogaster, GI78707274, Length=170, Percent_Identity=32.9411764705882, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20390; Mature: 20259

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLMLQVTPSQISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILI
CEEEEEECHHHHHHHHHCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEE
ASSFDQLKPYIDLSRVTEAQLQAAFDKWPGPFTFVIPAKADVSPMLRGCFDTIAVRVSAH
ECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHEEECCC
QDVRAMCYACQKPLVSTSANLAGEQPALTLAEVQTQLGDKIDAVVLGALGQSCQPSTIID
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEE
IQTGHIFRQG
EECCEEEECC
>Mature Secondary Structure 
TLMLQVTPSQISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILI
EEEEEECHHHHHHHHHCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEE
ASSFDQLKPYIDLSRVTEAQLQAAFDKWPGPFTFVIPAKADVSPMLRGCFDTIAVRVSAH
ECCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHEEECCC
QDVRAMCYACQKPLVSTSANLAGEQPALTLAEVQTQLGDKIDAVVLGALGQSCQPSTIID
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEE
IQTGHIFRQG
EECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA