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The map label for this gene is yrdD [H]

Identifier: 119773190

GI number: 119773190

Start: 51290

End: 51853

Strand: Direct

Name: yrdD [H]

Synonym: Sama_0048

Alternate gene names: 119773190

Gene position: 51290-51853 (Clockwise)

Preceding gene: 119773188

Following gene: 119773191

Centisome position: 1.19

GC content: 52.48

Gene sequence:

>564_bases
ATGTCCAAGATAGATCACAGCCTGTTCAGTGCCCACGAGCACGCCCTGGAGCGAGAGTTTGAGCTCTGCCCCGAGTGTGG
CAGCGAGCTGTCGGTGCGTCACAGCAAACATGGCAGTTTTGTTGGCTGCAACAACTACCCCAATTGCCAATACACCCGTC
CGTTGGTACAGCATGAATCCATTGAAACTCAGGTGATTGAAGGTTCCGTTTGTCCTGAATGTGGTCACGAACTTGCGGTT
AAATCCGGCCGGTTCGGTATTTTTATCGGTTGTACTCAATACCCAGAGTGTCATCACATCGAGAAGCCTGATCAGGCGGC
GCCGGAAGAAGCGGTTGCCTGCCCGGTGTGCCAAACCGGTGTGATGGATCACAGAACCAATCGCTATGGTAAAGGTTTTT
ACGCGTGTTCCTGTTATCCCAAATGCAAGTTTTTGGTGAACTATCCGCCGGTGGCTGAGGCCTGCCCTGATTGTGGATTT
GGTCTCTTGGTGCAGCGTAAAGGTGCTGGCGGTACGCGGCTCGAATGCCCTAATAAACCGTGCAAATACAAACGGCCTCT
TTGA

Upstream 100 bases:

>100_bases
ACAGAGGCTTGTCGCCAAGAGGCTGGGTTATTCAGACTCGTTGGCTTTCAGCCAGGCTTACCAATTGCTAAAATAGCGGC
AGTTTGCAGTAGAGGTCGCC

Downstream 100 bases:

>100_bases
GCCAGGCCGCATTTCTTTAAGCTTGCCAGCCGTGTCGTTATACTGAACATCCTGCCGGGTAGTCAGGGCCATTGGCGCGA
ATTTTCATGTCTTCGAGATG

Product: topoisomerase DNA-binding C4 zinc finger domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSKIDHSLFSAHEHALEREFELCPECGSELSVRHSKHGSFVGCNNYPNCQYTRPLVQHESIETQVIEGSVCPECGHELAV
KSGRFGIFIGCTQYPECHHIEKPDQAAPEEAVACPVCQTGVMDHRTNRYGKGFYACSCYPKCKFLVNYPPVAEACPDCGF
GLLVQRKGAGGTRLECPNKPCKYKRPL

Sequences:

>Translated_187_residues
MSKIDHSLFSAHEHALEREFELCPECGSELSVRHSKHGSFVGCNNYPNCQYTRPLVQHESIETQVIEGSVCPECGHELAV
KSGRFGIFIGCTQYPECHHIEKPDQAAPEEAVACPVCQTGVMDHRTNRYGKGFYACSCYPKCKFLVNYPPVAEACPDCGF
GLLVQRKGAGGTRLECPNKPCKYKRPL
>Mature_186_residues
SKIDHSLFSAHEHALEREFELCPECGSELSVRHSKHGSFVGCNNYPNCQYTRPLVQHESIETQVIEGSVCPECGHELAVK
SGRFGIFIGCTQYPECHHIEKPDQAAPEEAVACPVCQTGVMDHRTNRYGKGFYACSCYPKCKFLVNYPPVAEACPDCGFG
LLVQRKGAGGTRLECPNKPCKYKRPL

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=168, Percent_Identity=47.6190476190476, Blast_Score=164, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20770; Mature: 20639

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
9.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIDHSLFSAHEHALEREFELCPECGSELSVRHSKHGSFVGCNNYPNCQYTRPLVQHES
CCCHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHCC
IETQVIEGSVCPECGHELAVKSGRFGIFIGCTQYPECHHIEKPDQAAPEEAVACPVCQTG
CCEEEECCCCCCCCCHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEECCHHHCC
VMDHRTNRYGKGFYACSCYPKCKFLVNYPPVAEACPDCGFGLLVQRKGAGGTRLECPNKP
CHHCCCCCCCCCEEEEECCCCEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
CKYKRPL
CCCCCCC
>Mature Secondary Structure 
SKIDHSLFSAHEHALEREFELCPECGSELSVRHSKHGSFVGCNNYPNCQYTRPLVQHES
CCHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHCC
IETQVIEGSVCPECGHELAVKSGRFGIFIGCTQYPECHHIEKPDQAAPEEAVACPVCQTG
CCEEEECCCCCCCCCHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEECCHHHCC
VMDHRTNRYGKGFYACSCYPKCKFLVNYPPVAEACPDCGFGLLVQRKGAGGTRLECPNKP
CHHCCCCCCCCCEEEEECCCCEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
CKYKRPL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]