Click here to switch to the map view.

The map label for this gene is 119718497

Identifier: 119718497

GI number: 119718497

Start: 4520452

End: 4520949

Strand: Reverse

Name: 119718497

Synonym: Noca_4278

Alternate gene names: NA

Gene position: 4520949-4520452 (Counterclockwise)

Preceding gene: 119718498

Following gene: 119718495

Centisome position: 90.68

GC content: 75.9

Gene sequence:

>498_bases
TTGCCAGCGCACCCATCTGGTGACGCTCGCGACGCCGCAAATCGGTGGATCGAGGCTGAGACCACCGGTCGGCTTCCCGA
CCGACCGCGGCCGCAGGGCCGCTACGTCCCCGCGTTGGCCGAGGCCGGCCTGATCCTCACCGCGGGCATGACGCCGCGCG
TCGACGGCGTCCTGCAGTACGCCGGCCAGGTCGGCGGCACGGTCTCCGTCGACGAGGCGCGGACCGCTGCCGGGATCGCT
GTCGCGAACGCGGTCGCGGCCGCGGCCGGGGAGGCCGGGTCGCTCGACGCGATCGGCCGGGCGCTGCGGATGACCGTCTA
CGTGAACGCGGTCGGCGGCTTCACCGAGCACTCCCGGGTCGCCGACGGCGCGAGCGAGCGGCTGGTCGAGCTCCTCGGTG
AACGCGGCGTGGTCGTCCGCACCGCGGTCGGGGTCGCGTCCCTGCCGGGCGGGGCGTGCCTCGAGGTCGAGCTCACCTGC
GCCCGCGCCCGGCCGTGA

Upstream 100 bases:

>100_bases
TCGATCCACCGATTTCCGCCTGCTGCGCGCCCCCATCTGGGCACGCTGGCTGCGTTGCCGACGCTCGATAGACGCTCGGT
ATGGCTTCGCGCCGGACGCC

Downstream 100 bases:

>100_bases
GCCGCGCGCTACTGCGGCGGGTGCGCAGCGACGTGCTGCGCGAACGCCTCCAGCGCGGCCGCGCCGACCGCCTTGTCCTG
CTCGCCGTTGCCGCCGGAGA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: Translation Initiation Inhibitor

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MPAHPSGDARDAANRWIEAETTGRLPDRPRPQGRYVPALAEAGLILTAGMTPRVDGVLQYAGQVGGTVSVDEARTAAGIA
VANAVAAAAGEAGSLDAIGRALRMTVYVNAVGGFTEHSRVADGASERLVELLGERGVVVRTAVGVASLPGGACLEVELTC
ARARP

Sequences:

>Translated_165_residues
MPAHPSGDARDAANRWIEAETTGRLPDRPRPQGRYVPALAEAGLILTAGMTPRVDGVLQYAGQVGGTVSVDEARTAAGIA
VANAVAAAAGEAGSLDAIGRALRMTVYVNAVGGFTEHSRVADGASERLVELLGERGVVVRTAVGVASLPGGACLEVELTC
ARARP
>Mature_164_residues
PAHPSGDARDAANRWIEAETTGRLPDRPRPQGRYVPALAEAGLILTAGMTPRVDGVLQYAGQVGGTVSVDEARTAAGIAV
ANAVAAAAGEAGSLDAIGRALRMTVYVNAVGGFTEHSRVADGASERLVELLGERGVVVRTAVGVASLPGGACLEVELTCA
RARP

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16783; Mature: 16652

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAHPSGDARDAANRWIEAETTGRLPDRPRPQGRYVPALAEAGLILTAGMTPRVDGVLQY
CCCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHH
AGQVGGTVSVDEARTAAGIAVANAVAAAAGEAGSLDAIGRALRMTVYVNAVGGFTEHSRV
HHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEEEECCCCCCCHHHH
ADGASERLVELLGERGVVVRTAVGVASLPGGACLEVELTCARARP
HCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCC
>Mature Secondary Structure 
PAHPSGDARDAANRWIEAETTGRLPDRPRPQGRYVPALAEAGLILTAGMTPRVDGVLQY
CCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHH
AGQVGGTVSVDEARTAAGIAVANAVAAAAGEAGSLDAIGRALRMTVYVNAVGGFTEHSRV
HHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEEEECCCCCCCHHHH
ADGASERLVELLGERGVVVRTAVGVASLPGGACLEVELTCARARP
HCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA