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The map label for this gene is yukF [H]

Identifier: 119718495

GI number: 119718495

Start: 4518204

End: 4519862

Strand: Reverse

Name: yukF [H]

Synonym: Noca_4276

Alternate gene names: 119718495

Gene position: 4519862-4518204 (Counterclockwise)

Preceding gene: 119718497

Following gene: 119718493

Centisome position: 90.65

GC content: 74.5

Gene sequence:

>1659_bases
GTGTCGGACCCCCACGGCGAAGTGACCCTCGAGCGGCTCCTCGACGAGCGGCTGCTCCAGGGCGCGGTGCTCGTCGCCGG
CGCAGACCCCGGCGTGGCGGTGCGGTGGTGCCACTCGCTGGCCGACCTCGAGGACCCGCCGCGCGACCTGGACCTGGTCG
CGGTGATGGCCCGCCCCGAGCAGCTGACCGCGACCGTGCTGCAGCGGCTGGTGGCTGCCGGCGCGGCCGCGGTCTTCGTG
CTCGCCTCCTCCGAGGCCGACCGGTCGCCGCCTGCGGTGCCGGGGTTGAACGTCGTCGTCGTGCCGCCGGGCGTGCCGCC
CCGGGCGCTGGCCGAGCTGGTCGCCCGCCTCGGGCTGGCCCACGAGAGCCACGTGCTGCAGTACGCCCAGCGGGTGCACA
GCGCGCTGGCGCAGCTGCTCCATCGCGGCGCCGGCGTCTCGGCGCTGTGCACCCGGATGTCGCGGCTGAGCAACTGCTCG
GTGGCCGTGATCGCGACCGACCTGAGGATCCTGGCCTTCGACCAGGGGCCGAACCCGTGGATGCACGCCTCGATGGTCGC
GGCGACCGTCCGGGAGCTGCACGAGCGGCTGCTCCAGGAGGACGTCTCGGCGGGGCCGGTGACCCTGGAGACGTCGATCG
GCGACAACGAGGTCGTGTGCGTGGTCGGCGCCATCGAGCTGGCCGACCACCGGGAGGGGTGGATCGCCGTCATCAACGCC
GACGACTCGCCGCACGGGCACGACCTCGCCGAGCACCGCGTGGTGGTGGAGCAGGCCGCCACCATCGTCGGCACCGAGCT
GCTGCGGCTGCGCAGTGTGGAGCGCGCGGAGGAGCGGGCCCGCGGCAACTTCGTGCACGCGCTGCTGCACGGCCGGTTCT
CCAACCACGCCGACCTGGTCGCCCGGGCGTCGCACCACGACTTCGCCGTCGAGGGCCGCTACGGCGTCGTGATCGCGCGC
AGCGCCGGCCTGATCGCGGAACGCGACGCGCCGGTCCGGCTCGCCGAGATGGCGCGCGAGGCGCTCCGCGTCGCACCCGT
GGACGACCGGCAGACGCTGACCGCCGTGGTCGGGGACGTGCTCGCGGTCGTCCGGCAGGTCTCACCGGCGGGCCGCACGC
ATCCGGACCCGACCGCCCACGAGCTGCGGGACTACGCGACCGGCCTCGAGCGGCGCCTGGCCCGGCTCCTGCAGCGCCCG
GTCCACGTGGCCTACGGCCGTCCGGTGAAGGGCGCCGAGCAGATCGTGCTCAGCTACCGCGAGGCCCGGATCGCCCTGGA
CCTCGGCGAGCGGCTCCGGATGGAGCGGGTCTGCGGCTTCGCCGACCTCCGGGTCGACTCGGCGCTGCTCGGGCTCGCGC
GCGAGCCGGCCGGCAAGAGCTTCTTCACCGACGTCCTCGAGCCGCTCCGCCAGGATCGGAGCGGGACGCTGCTCGACGTC
GCCCGGGAGTACGTCGCGGCGGGGGGCAACGTGAACGAGTCGGCGCGGCGACTCGGGATCCACCGCAACACGATGCTGTA
CAAGCTGGACCGGATCTCGCGGCTGCTCGAGCGGGACATCCGCGAGGCGGACACCCAGTTCACGATCTGGCTCGCCCTGC
GGCTCTCGACGCTGGCCGCGACCGCCGAGCTCGTCGACCGGGACGTGAGCTCGGGCTGA

Upstream 100 bases:

>100_bases
CCACGGTCGGCCGCAGTTGCCCCAGACTCGCGAACCGCGTCGCCCGGGACAAGGGCAGATGTGCCAAATCCGATCCGCTT
TCTTGCCCTAAGGTGCACAT

Downstream 100 bases:

>100_bases
CCGCTCCCGGACGTCAGACGGACGGTGTCACCTGTCCCACCGTCCGCATGGCGTCCCGAGACCCCGGGCCGGGGCCCGGG
TCGGCGGCCGGGTCGGGGCC

Product: CdaR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 551

Protein sequence:

>552_residues
MSDPHGEVTLERLLDERLLQGAVLVAGADPGVAVRWCHSLADLEDPPRDLDLVAVMARPEQLTATVLQRLVAAGAAAVFV
LASSEADRSPPAVPGLNVVVVPPGVPPRALAELVARLGLAHESHVLQYAQRVHSALAQLLHRGAGVSALCTRMSRLSNCS
VAVIATDLRILAFDQGPNPWMHASMVAATVRELHERLLQEDVSAGPVTLETSIGDNEVVCVVGAIELADHREGWIAVINA
DDSPHGHDLAEHRVVVEQAATIVGTELLRLRSVERAEERARGNFVHALLHGRFSNHADLVARASHHDFAVEGRYGVVIAR
SAGLIAERDAPVRLAEMAREALRVAPVDDRQTLTAVVGDVLAVVRQVSPAGRTHPDPTAHELRDYATGLERRLARLLQRP
VHVAYGRPVKGAEQIVLSYREARIALDLGERLRMERVCGFADLRVDSALLGLAREPAGKSFFTDVLEPLRQDRSGTLLDV
AREYVAAGGNVNESARRLGIHRNTMLYKLDRISRLLERDIREADTQFTIWLALRLSTLAATAELVDRDVSSG

Sequences:

>Translated_552_residues
MSDPHGEVTLERLLDERLLQGAVLVAGADPGVAVRWCHSLADLEDPPRDLDLVAVMARPEQLTATVLQRLVAAGAAAVFV
LASSEADRSPPAVPGLNVVVVPPGVPPRALAELVARLGLAHESHVLQYAQRVHSALAQLLHRGAGVSALCTRMSRLSNCS
VAVIATDLRILAFDQGPNPWMHASMVAATVRELHERLLQEDVSAGPVTLETSIGDNEVVCVVGAIELADHREGWIAVINA
DDSPHGHDLAEHRVVVEQAATIVGTELLRLRSVERAEERARGNFVHALLHGRFSNHADLVARASHHDFAVEGRYGVVIAR
SAGLIAERDAPVRLAEMAREALRVAPVDDRQTLTAVVGDVLAVVRQVSPAGRTHPDPTAHELRDYATGLERRLARLLQRP
VHVAYGRPVKGAEQIVLSYREARIALDLGERLRMERVCGFADLRVDSALLGLAREPAGKSFFTDVLEPLRQDRSGTLLDV
AREYVAAGGNVNESARRLGIHRNTMLYKLDRISRLLERDIREADTQFTIWLALRLSTLAATAELVDRDVSSG
>Mature_551_residues
SDPHGEVTLERLLDERLLQGAVLVAGADPGVAVRWCHSLADLEDPPRDLDLVAVMARPEQLTATVLQRLVAAGAAAVFVL
ASSEADRSPPAVPGLNVVVVPPGVPPRALAELVARLGLAHESHVLQYAQRVHSALAQLLHRGAGVSALCTRMSRLSNCSV
AVIATDLRILAFDQGPNPWMHASMVAATVRELHERLLQEDVSAGPVTLETSIGDNEVVCVVGAIELADHREGWIAVINAD
DSPHGHDLAEHRVVVEQAATIVGTELLRLRSVERAEERARGNFVHALLHGRFSNHADLVARASHHDFAVEGRYGVVIARS
AGLIAERDAPVRLAEMAREALRVAPVDDRQTLTAVVGDVLAVVRQVSPAGRTHPDPTAHELRDYATGLERRLARLLQRPV
HVAYGRPVKGAEQIVLSYREARIALDLGERLRMERVCGFADLRVDSALLGLAREPAGKSFFTDVLEPLRQDRSGTLLDVA
REYVAAGGNVNESARRLGIHRNTMLYKLDRISRLLERDIREADTQFTIWLALRLSTLAATAELVDRDVSSG

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010312 [H]

Pfam domain/function: PF06018 CodY [H]

EC number: NA

Molecular weight: Translated: 59954; Mature: 59823

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPHGEVTLERLLDERLLQGAVLVAGADPGVAVRWCHSLADLEDPPRDLDLVAVMARPE
CCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCH
QLTATVLQRLVAAGAAAVFVLASSEADRSPPAVPGLNVVVVPPGVPPRALAELVARLGLA
HHHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
HESHVLQYAQRVHSALAQLLHRGAGVSALCTRMSRLSNCSVAVIATDLRILAFDQGPNPW
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECEEEEEECCCCCCH
MHASMVAATVRELHERLLQEDVSAGPVTLETSIGDNEVVCVVGAIELADHREGWIAVINA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEEC
DDSPHGHDLAEHRVVVEQAATIVGTELLRLRSVERAEERARGNFVHALLHGRFSNHADLV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH
ARASHHDFAVEGRYGVVIARSAGLIAERDAPVRLAEMAREALRVAPVDDRQTLTAVVGDV
HCCCCCCEEEECCEEEEEEECCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LAVVRQVSPAGRTHPDPTAHELRDYATGLERRLARLLQRPVHVAYGRPVKGAEQIVLSYR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH
EARIALDLGERLRMERVCGFADLRVDSALLGLAREPAGKSFFTDVLEPLRQDRSGTLLDV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
AREYVAAGGNVNESARRLGIHRNTMLYKLDRISRLLERDIREADTQFTIWLALRLSTLAA
HHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
TAELVDRDVSSG
HHHHHHHCCCCC
>Mature Secondary Structure 
SDPHGEVTLERLLDERLLQGAVLVAGADPGVAVRWCHSLADLEDPPRDLDLVAVMARPE
CCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCH
QLTATVLQRLVAAGAAAVFVLASSEADRSPPAVPGLNVVVVPPGVPPRALAELVARLGLA
HHHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
HESHVLQYAQRVHSALAQLLHRGAGVSALCTRMSRLSNCSVAVIATDLRILAFDQGPNPW
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECEEEEEECCCCCCH
MHASMVAATVRELHERLLQEDVSAGPVTLETSIGDNEVVCVVGAIELADHREGWIAVINA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCEEEEEEC
DDSPHGHDLAEHRVVVEQAATIVGTELLRLRSVERAEERARGNFVHALLHGRFSNHADLV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH
ARASHHDFAVEGRYGVVIARSAGLIAERDAPVRLAEMAREALRVAPVDDRQTLTAVVGDV
HCCCCCCEEEECCEEEEEEECCCCEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LAVVRQVSPAGRTHPDPTAHELRDYATGLERRLARLLQRPVHVAYGRPVKGAEQIVLSYR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH
EARIALDLGERLRMERVCGFADLRVDSALLGLAREPAGKSFFTDVLEPLRQDRSGTLLDV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
AREYVAAGGNVNESARRLGIHRNTMLYKLDRISRLLERDIREADTQFTIWLALRLSTLAA
HHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
TAELVDRDVSSG
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]