| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is ywrD [H]
Identifier: 119718498
GI number: 119718498
Start: 4521053
End: 4522612
Strand: Reverse
Name: ywrD [H]
Synonym: Noca_4279
Alternate gene names: 119718498
Gene position: 4522612-4521053 (Counterclockwise)
Preceding gene: 119718499
Following gene: 119718497
Centisome position: 90.71
GC content: 77.12
Gene sequence:
>1560_bases GTGGTCACCTCGAGCAGCCCGTTCGTCTCGCTGGCCGGCGCCCGGGTCCTGGCCGACGGCGGCACGGCGATCGACGCGAC GCTCGCGATGGCGGCCGTCGCCTGGATGGTGCTGCCCGGCCAGTGTGGCCTCGGCGGCGACGCGTTCGCGATCGTCCGGG AGCCCGACGGCGAGGTCTGGACCGTCAGCGGCAGCGGTTTCGGCCCCGACGGGGGGACGCCGGAGCTCTACGCCGGGCTG GGCCTCGACGCACTGCCGCTGACCGGGCCGCACGCGGTCGCGGTGCCCGGCGCGCCGGCCGCCGTCCGGACCCTCCAGGG CCGGGCCACTCGTGGCCTCGACGAGCTGTGGGCACCGGCGCTCCGGCTCGCCCGCGAGGGCGTCGCCGCGAGCGCCAAGA CCCGGGCGGACGTCGGGGAGTTCGCCGCGGCCCTGGACGCCGACCCCGGCGCCCGGGCCGCGTTCCTGCCGGGCGGAGTC CCACCCGAGGTCGGTGCCCGGCTGCGCCAGGCCGACCTGGCGACCACGCTGGAGCGGCTGGCCGCCGACCCGGACGCCTT CTACACCGGCTGGTTCGCCGACCGTGCGGTCGAGCACCTGGTCGCGAGCGGGGCGCCGTACTCCGGCGCCGAGTGGGCCG CGGTCGCGCACGCGCCGGTGGCGCCCGCCATCGCCACGGCGTACGGCGGCGCCCGGCTGCATCAGACGCCGATGCCCTCG GCCGGGTGGATGGTGCTCCAGCAGGCGGCGCTCTGCGACGGGGAGCTGGTCGGGTCGGAGCAGCTCGGGGCGCCGGCCGT GCACTGGCTGGCCGAGGCCGCGGCCGCGGCGTTCCGCGACCGGTTCGCCTCCTGCGGCTCGGACACCGACGCCTGGCAGC GGACCCTGGACCCGGCCGCGCTCGAGCGGACCCGCGCCGCGATCCGCAGCCGGGACCGGGTCGGGCCGGCGCCGATGCGG GTCGCCGGCGACACCACCTCGACCGTGTGTGTCGACGCCGACGGCCGCGCCGTCAGCTTCATCCACTCCCTCGGCTTCAC CTTCGGGGCCCGGCTGAGCGTGCCCGGCACGGGCGTGATCCTCAACAACCGCCTGGGCCGCGGGGCCTACCTGATCGACG GCCACCCCAACGAGGTGCGCCCGCGCCGCAAGCCGCTGCACACCCTCAACGCGTGGCTCCTCGACGAGCCCGGTGTCGGT CTGCTGCACGCCGGCAACTGCCCGGGCGGGGACGGTCAGGTGCAGTGGAACATGCAGGTGATCAGCCACCTGGTCGACCA CGGCGACGACCCCCAGCGTGCGGTCTCGCTGCCCCGGTTCACCGTCTTCCCGGGCTCGGACGCGGACGTGGTCGGGCGCC GCCGCGAGCTGCGGTGCGAAGGCGGCATCCCCGCGACGACGCTCGAGACGCTGGGGGCGTGGGGCCACGACGTGGTCCCG GTGCCGGTGCAGGTCGGCGGGCCCGGCGGGTCCGCCCTCGCGATCTCGATGGACCACCGACACGGGTGCGTGCGCGCCGG CGCCGACCCGCGCATGGAAGGAGTGGCGCTTGCCGTCTGA
Upstream 100 bases:
>100_bases CCGACGGCGGGCCGCGGCGCCGCAAGCTGCGTCGGGACTGATGGGCCGCGGACCCGACCCGGTGCCGGTCGCCCGGCGAC CGGTCCTCGGGACCGGCGGC
Downstream 100 bases:
>100_bases GCCTCGATCCACCGATTTCCGCCTGCTGCGCGCCCCCATCTGGGCACGCTGGCTGCGTTGCCGACGCTCGATAGACGCTC GGTATGGCTTCGCGCCGGAC
Product: gamma-glutamyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MVTSSSPFVSLAGARVLADGGTAIDATLAMAAVAWMVLPGQCGLGGDAFAIVREPDGEVWTVSGSGFGPDGGTPELYAGL GLDALPLTGPHAVAVPGAPAAVRTLQGRATRGLDELWAPALRLAREGVAASAKTRADVGEFAAALDADPGARAAFLPGGV PPEVGARLRQADLATTLERLAADPDAFYTGWFADRAVEHLVASGAPYSGAEWAAVAHAPVAPAIATAYGGARLHQTPMPS AGWMVLQQAALCDGELVGSEQLGAPAVHWLAEAAAAAFRDRFASCGSDTDAWQRTLDPAALERTRAAIRSRDRVGPAPMR VAGDTTSTVCVDADGRAVSFIHSLGFTFGARLSVPGTGVILNNRLGRGAYLIDGHPNEVRPRRKPLHTLNAWLLDEPGVG LLHAGNCPGGDGQVQWNMQVISHLVDHGDDPQRAVSLPRFTVFPGSDADVVGRRRELRCEGGIPATTLETLGAWGHDVVP VPVQVGGPGGSALAISMDHRHGCVRAGADPRMEGVALAV
Sequences:
>Translated_519_residues MVTSSSPFVSLAGARVLADGGTAIDATLAMAAVAWMVLPGQCGLGGDAFAIVREPDGEVWTVSGSGFGPDGGTPELYAGL GLDALPLTGPHAVAVPGAPAAVRTLQGRATRGLDELWAPALRLAREGVAASAKTRADVGEFAAALDADPGARAAFLPGGV PPEVGARLRQADLATTLERLAADPDAFYTGWFADRAVEHLVASGAPYSGAEWAAVAHAPVAPAIATAYGGARLHQTPMPS AGWMVLQQAALCDGELVGSEQLGAPAVHWLAEAAAAAFRDRFASCGSDTDAWQRTLDPAALERTRAAIRSRDRVGPAPMR VAGDTTSTVCVDADGRAVSFIHSLGFTFGARLSVPGTGVILNNRLGRGAYLIDGHPNEVRPRRKPLHTLNAWLLDEPGVG LLHAGNCPGGDGQVQWNMQVISHLVDHGDDPQRAVSLPRFTVFPGSDADVVGRRRELRCEGGIPATTLETLGAWGHDVVP VPVQVGGPGGSALAISMDHRHGCVRAGADPRMEGVALAV >Mature_519_residues MVTSSSPFVSLAGARVLADGGTAIDATLAMAAVAWMVLPGQCGLGGDAFAIVREPDGEVWTVSGSGFGPDGGTPELYAGL GLDALPLTGPHAVAVPGAPAAVRTLQGRATRGLDELWAPALRLAREGVAASAKTRADVGEFAAALDADPGARAAFLPGGV PPEVGARLRQADLATTLERLAADPDAFYTGWFADRAVEHLVASGAPYSGAEWAAVAHAPVAPAIATAYGGARLHQTPMPS AGWMVLQQAALCDGELVGSEQLGAPAVHWLAEAAAAAFRDRFASCGSDTDAWQRTLDPAALERTRAAIRSRDRVGPAPMR VAGDTTSTVCVDADGRAVSFIHSLGFTFGARLSVPGTGVILNNRLGRGAYLIDGHPNEVRPRRKPLHTLNAWLLDEPGVG LLHAGNCPGGDGQVQWNMQVISHLVDHGDDPQRAVSLPRFTVFPGSDADVVGRRRELRCEGGIPATTLETLGAWGHDVVP VPVQVGGPGGSALAISMDHRHGCVRAGADPRMEGVALAV
Specific function: GGT PLAYS A KEY ROLE IN THE GAMMA-GLUTAMYL CYCLE, A PATHWAY FOR THE SYNTHESIS AND DEGRADATION OF GLUTATHIONE. [C]
COG id: COG0405
COG function: function code E; Gamma-glutamyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-glutamyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789856, Length=508, Percent_Identity=26.9685039370079, Blast_Score=142, Evalue=7e-35, Organism=Drosophila melanogaster, GI18859893, Length=424, Percent_Identity=26.4150943396226, Blast_Score=87, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000101 [H]
Pfam domain/function: PF01019 G_glu_transpept [H]
EC number: =2.3.2.2 [H]
Molecular weight: Translated: 53469; Mature: 53469
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTSSSPFVSLAGARVLADGGTAIDATLAMAAVAWMVLPGQCGLGGDAFAIVREPDGEVW CCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEE TVSGSGFGPDGGTPELYAGLGLDALPLTGPHAVAVPGAPAAVRTLQGRATRGLDELWAPA EEECCCCCCCCCCCHHEECCCCCCCCCCCCCEEECCCCCHHHHHHHCHHHCCHHHHHHHH LRLAREGVAASAKTRADVGEFAAALDADPGARAAFLPGGVPPEVGARLRQADLATTLERL HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH AADPDAFYTGWFADRAVEHLVASGAPYSGAEWAAVAHAPVAPAIATAYGGARLHQTPMPS HCCCCHHEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHCCCCEEECCCCCC AGWMVLQQAALCDGELVGSEQLGAPAVHWLAEAAAAAFRDRFASCGSDTDAWQRTLDPAA CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHH LERTRAAIRSRDRVGPAPMRVAGDTTSTVCVDADGRAVSFIHSLGFTFGARLSVPGTGVI HHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCEEECCCCEEE LNNRLGRGAYLIDGHPNEVRPRRKPLHTLNAWLLDEPGVGLLHAGNCPGGDGQVQWNMQV EECCCCCCEEEECCCCCCCCCCCCCHHHHHHEEECCCCCCEEECCCCCCCCCEEEEEHHH ISHLVDHGDDPQRAVSLPRFTVFPGSDADVVGRRRELRCEGGIPATTLETLGAWGHDVVP HHHHHHCCCCHHHHHCCCEEEECCCCCHHHHCCCHHEEECCCCCHHHHHHHCCCCCCEEE VPVQVGGPGGSALAISMDHRHGCVRAGADPRMEGVALAV EEEEECCCCCCEEEEEECCCCCCEECCCCCCCCCEEEEC >Mature Secondary Structure MVTSSSPFVSLAGARVLADGGTAIDATLAMAAVAWMVLPGQCGLGGDAFAIVREPDGEVW CCCCCCCCEEECCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEE TVSGSGFGPDGGTPELYAGLGLDALPLTGPHAVAVPGAPAAVRTLQGRATRGLDELWAPA EEECCCCCCCCCCCHHEECCCCCCCCCCCCCEEECCCCCHHHHHHHCHHHCCHHHHHHHH LRLAREGVAASAKTRADVGEFAAALDADPGARAAFLPGGVPPEVGARLRQADLATTLERL HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH AADPDAFYTGWFADRAVEHLVASGAPYSGAEWAAVAHAPVAPAIATAYGGARLHQTPMPS HCCCCHHEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHCCCCEEECCCCCC AGWMVLQQAALCDGELVGSEQLGAPAVHWLAEAAAAAFRDRFASCGSDTDAWQRTLDPAA CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHH LERTRAAIRSRDRVGPAPMRVAGDTTSTVCVDADGRAVSFIHSLGFTFGARLSVPGTGVI HHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCEEECCCCEEE LNNRLGRGAYLIDGHPNEVRPRRKPLHTLNAWLLDEPGVGLLHAGNCPGGDGQVQWNMQV EECCCCCCEEEECCCCCCCCCCCCCHHHHHHEEECCCCCCEEECCCCCCCCCEEEEEHHH ISHLVDHGDDPQRAVSLPRFTVFPGSDADVVGRRRELRCEGGIPATTLETLGAWGHDVVP HHHHHHCCCCHHHHHCCCEEEECCCCCHHHHCCCHHEEECCCCCHHHHHHHCCCCCCEEE VPVQVGGPGGSALAISMDHRHGCVRAGADPRMEGVALAV EEEEECCCCCCEEEEEECCCCCCEECCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]