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The map label for this gene is dppC [H]

Identifier: 119718311

GI number: 119718311

Start: 4322810

End: 4323850

Strand: Reverse

Name: dppC [H]

Synonym: Noca_4092

Alternate gene names: 119718311

Gene position: 4323850-4322810 (Counterclockwise)

Preceding gene: 119718312

Following gene: 119718310

Centisome position: 86.72

GC content: 70.41

Gene sequence:

>1041_bases
ATGAGGATGACCCAGGTCCCTGCTGCGCCGGCGGTCGACCAGGCCCCCGGTGCACTCGTCGCCGCCGCGTCCGTCCACCG
CGTGGGTGAGGTGGGGCTGCTCCGGCGGCTCGCGTCGCGCCGGCTGTCGCTGCTGAGTCTCGTCGGTGTCGCCTTCTTCC
TGCTGCTCGCGCTGATCGGTCCCTTCTTCGCTCCCCATGGGCTCGGTGAGCTCGGCGACGACGCGCTCGCTCCGCCGAGC
GTGGACCACTGGATGGGGACGGACTCGGTCGGCCGCGACGTCTTCTCCCGGTTCCTCTACGGGTCGCGGATCTCCATCCT
GGTCGGCTTCGTGGCGGTCCTCGTGGCGATGGCGCTCGGCACGTTGCTCGGCATGCTGGCCGGCATGCGCTCCGGAAAGG
CCCGCGACAGCATCATCATGCGGTTGATGGACGTGATCTTGGCCTTCCCGCTGCTGGTCCTCGTCCCGGTGATCACAGGC
GTGATCGGTCAACGCGACCTGTCGCTCGGGCCGATCCCGATCGGGCCGGAGGCACTGGTGTCCGCGGCGATCGGCGTCGT
GCTGATCCCGGTCTTCGCCCGCATCGCCCGAGCCAGCGTCCTGGCCGAGATGCGTGAGGACTACGTGCTCGCCGTCCGCT
CGTTCGGAGGCCGCGGCCGTGACGTCTTGTTCCGCAACCTGCTGCCCAACATCGCGGCCCCGCTGGTCGTGCAGGCGGCG
TTCGGCCTGGCGATGGCGGTCACCGTCGAGGCAGCGGTGTCGTTCCTGGGTCTCGGCGTCCAGCCGCCGGGGGCGAGCTG
GGGGACGATGCTCGCTGACGCCCGTCAGTACGTCACGCTCGGTGCGTGGTGGCTCGTGCTGTTCCCGTCCGTGGCCATCG
CCCTGTTCGTGCTCGTCTTCAACCTGCTGGGCGACCAGCTGCGTGACGAGCTGGACCCGCGCGCCAGGACCGCGGCAGCT
GGACGGAGACGCCGGTCGCGTGGCAAGGCGTCGGAGGAGCGGTCGCAGGTCGAGGAGGACGACACCGATGAGCACGCCTG
A

Upstream 100 bases:

>100_bases
TGTTCATCGCGGCTGTCTTCGTCTTCATCAACATCATCGTCGACCTCCTCTACGGGGTGATCAACCCACGGATCCGGGTC
GCCTACGGCTCCGGGAAGGA

Downstream 100 bases:

>100_bases
GCACGAGGAGGTCCTCCGGATCTCCGGCCTGAACACGACCTACCAGTTCCGCGGGCATCCGGTCCCGGCGGTCCAGGACC
TCTCGCTCTCCGTGCGGCCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MRMTQVPAAPAVDQAPGALVAAASVHRVGEVGLLRRLASRRLSLLSLVGVAFFLLLALIGPFFAPHGLGELGDDALAPPS
VDHWMGTDSVGRDVFSRFLYGSRISILVGFVAVLVAMALGTLLGMLAGMRSGKARDSIIMRLMDVILAFPLLVLVPVITG
VIGQRDLSLGPIPIGPEALVSAAIGVVLIPVFARIARASVLAEMREDYVLAVRSFGGRGRDVLFRNLLPNIAAPLVVQAA
FGLAMAVTVEAAVSFLGLGVQPPGASWGTMLADARQYVTLGAWWLVLFPSVAIALFVLVFNLLGDQLRDELDPRARTAAA
GRRRRSRGKASEERSQVEEDDTDEHA

Sequences:

>Translated_346_residues
MRMTQVPAAPAVDQAPGALVAAASVHRVGEVGLLRRLASRRLSLLSLVGVAFFLLLALIGPFFAPHGLGELGDDALAPPS
VDHWMGTDSVGRDVFSRFLYGSRISILVGFVAVLVAMALGTLLGMLAGMRSGKARDSIIMRLMDVILAFPLLVLVPVITG
VIGQRDLSLGPIPIGPEALVSAAIGVVLIPVFARIARASVLAEMREDYVLAVRSFGGRGRDVLFRNLLPNIAAPLVVQAA
FGLAMAVTVEAAVSFLGLGVQPPGASWGTMLADARQYVTLGAWWLVLFPSVAIALFVLVFNLLGDQLRDELDPRARTAAA
GRRRRSRGKASEERSQVEEDDTDEHA
>Mature_346_residues
MRMTQVPAAPAVDQAPGALVAAASVHRVGEVGLLRRLASRRLSLLSLVGVAFFLLLALIGPFFAPHGLGELGDDALAPPS
VDHWMGTDSVGRDVFSRFLYGSRISILVGFVAVLVAMALGTLLGMLAGMRSGKARDSIIMRLMDVILAFPLLVLVPVITG
VIGQRDLSLGPIPIGPEALVSAAIGVVLIPVFARIARASVLAEMREDYVLAVRSFGGRGRDVLFRNLLPNIAAPLVVQAA
FGLAMAVTVEAAVSFLGLGVQPPGASWGTMLADARQYVTLGAWWLVLFPSVAIALFVLVFNLLGDQLRDELDPRARTAAA
GRRRRSRGKASEERSQVEEDDTDEHA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=292, Percent_Identity=40.7534246575342, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789964, Length=270, Percent_Identity=44.0740740740741, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1787054, Length=284, Percent_Identity=37.3239436619718, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1787549, Length=282, Percent_Identity=34.3971631205674, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1787498, Length=286, Percent_Identity=33.9160839160839, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789889, Length=249, Percent_Identity=34.136546184739, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1788505, Length=242, Percent_Identity=33.4710743801653, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36729; Mature: 36729

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMTQVPAAPAVDQAPGALVAAASVHRVGEVGLLRRLASRRLSLLSLVGVAFFLLLALIG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFFAPHGLGELGDDALAPPSVDHWMGTDSVGRDVFSRFLYGSRISILVGFVAVLVAMALG
HHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TLLGMLAGMRSGKARDSIIMRLMDVILAFPLLVLVPVITGVIGQRDLSLGPIPIGPEALV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
SAAIGVVLIPVFARIARASVLAEMREDYVLAVRSFGGRGRDVLFRNLLPNIAAPLVVQAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
FGLAMAVTVEAAVSFLGLGVQPPGASWGTMLADARQYVTLGAWWLVLFPSVAIALFVLVF
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLGDQLRDELDPRARTAAAGRRRRSRGKASEERSQVEEDDTDEHA
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRMTQVPAAPAVDQAPGALVAAASVHRVGEVGLLRRLASRRLSLLSLVGVAFFLLLALIG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFFAPHGLGELGDDALAPPSVDHWMGTDSVGRDVFSRFLYGSRISILVGFVAVLVAMALG
HHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TLLGMLAGMRSGKARDSIIMRLMDVILAFPLLVLVPVITGVIGQRDLSLGPIPIGPEALV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
SAAIGVVLIPVFARIARASVLAEMREDYVLAVRSFGGRGRDVLFRNLLPNIAAPLVVQAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
FGLAMAVTVEAAVSFLGLGVQPPGASWGTMLADARQYVTLGAWWLVLFPSVAIALFVLVF
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLGDQLRDELDPRARTAAAGRRRRSRGKASEERSQVEEDDTDEHA
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]