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The map label for this gene is dppD [H]

Identifier: 119718310

GI number: 119718310

Start: 4321804

End: 4322823

Strand: Reverse

Name: dppD [H]

Synonym: Noca_4091

Alternate gene names: 119718310

Gene position: 4322823-4321804 (Counterclockwise)

Preceding gene: 119718311

Following gene: 119718309

Centisome position: 86.7

GC content: 68.92

Gene sequence:

>1020_bases
ATGAGCACGCCTGAGCACGAGGAGGTCCTCCGGATCTCCGGCCTGAACACGACCTACCAGTTCCGCGGGCATCCGGTCCC
GGCGGTCCAGGACCTCTCGCTCTCCGTGCGGCCCGGCGAGGTGGTCGGGCTGGTGGGGGAGAGCGGATCGGGCAAGAGCA
CCGCGCTGAAGTCGATCCTCGGCATGCTGCGCCCGCCCGCGGAGGTGGCCGCGGACGAGATCGCGCTCTGCGGTCGCGAC
CTGCGCGCCCTGAGCGCGGAGGAGAACCGTCGGATCCGGGGCGGCGAGATGTCGATGATCTTCCAGGACCCGATCAACTC
GTTCAATCCGTCGTGGACGATCGGAAGCCAGTTCCGGCGCGTCCTCGGCCTCCACCGGCCCGACCTGAATCGCAACGACT
ACGACGACGAGATCATCCGGCTGCTCGCCGGGGTCGGGATAGACGGGCGGGGCAAGCTGAAGTCCTACCCGTTCCAGTTC
AGCCAGGGCCAGCTGCAGCGGATCATGATCGCGGTCGCGTGTGCGAGCAAGGACCTCAAGGTGCTGCTCGCCGACGAGCC
CACCACGAGCCTCGACGTCACGATCGAGGCGCAGGTCCTCGAGCTGCTACGCCGGCTGCGGGCCGAGCGGAACCTGGCGC
TGGTGCTCGTCACCCACGACCTCTCGGTGGTTGCCGAGATGTGCGACAAGGTGGTCGTCATGTACGCCGGTCGGGTGGTC
GAGGTCGCGGACGTGTACCAGCTGTTCGAGTCGCCGCAGCATCCCTACACCGAGCAGCTGCTCAAGGCGATCCCCCACTT
CCCGCACGATGGCCAGCGGCTCTACGCCATGCGGGGTGCGGTCCCGGGCCTGGACGAGAAGGTCCCCGGCTGCGCGTTCG
CAGCCCGCTGCGACCGCTATCTGGGCGAGGTCTGCGACACCGTCAAGCCGACGCTGGCGCCCACCACCACCGACGGTGGG
GGTGTGGCCGCCTGCCACCTCGTCGCCGAACCCGCGCTCGCTAGGAGGGCATCGGTATGA

Upstream 100 bases:

>100_bases
GAGCTGGACCCGCGCGCCAGGACCGCGGCAGCTGGACGGAGACGCCGGTCGCGTGGCAAGGCGTCGGAGGAGCGGTCGCA
GGTCGAGGAGGACGACACCG

Downstream 100 bases:

>100_bases
GCAGTCCCACCCGCGGCCCCGCCGCGACGGACCGCGGCGCCAGACCGACGCCGACGCCGATCGTGTCGGTGACGGAGCTG
AAGACCCACTTCCCGGTGGG

Product: oligopeptide/dipeptide ABC transporter, ATPase subunit

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSTPEHEEVLRISGLNTTYQFRGHPVPAVQDLSLSVRPGEVVGLVGESGSGKSTALKSILGMLRPPAEVAADEIALCGRD
LRALSAEENRRIRGGEMSMIFQDPINSFNPSWTIGSQFRRVLGLHRPDLNRNDYDDEIIRLLAGVGIDGRGKLKSYPFQF
SQGQLQRIMIAVACASKDLKVLLADEPTTSLDVTIEAQVLELLRRLRAERNLALVLVTHDLSVVAEMCDKVVVMYAGRVV
EVADVYQLFESPQHPYTEQLLKAIPHFPHDGQRLYAMRGAVPGLDEKVPGCAFAARCDRYLGEVCDTVKPTLAPTTTDGG
GVAACHLVAEPALARRASV

Sequences:

>Translated_339_residues
MSTPEHEEVLRISGLNTTYQFRGHPVPAVQDLSLSVRPGEVVGLVGESGSGKSTALKSILGMLRPPAEVAADEIALCGRD
LRALSAEENRRIRGGEMSMIFQDPINSFNPSWTIGSQFRRVLGLHRPDLNRNDYDDEIIRLLAGVGIDGRGKLKSYPFQF
SQGQLQRIMIAVACASKDLKVLLADEPTTSLDVTIEAQVLELLRRLRAERNLALVLVTHDLSVVAEMCDKVVVMYAGRVV
EVADVYQLFESPQHPYTEQLLKAIPHFPHDGQRLYAMRGAVPGLDEKVPGCAFAARCDRYLGEVCDTVKPTLAPTTTDGG
GVAACHLVAEPALARRASV
>Mature_338_residues
STPEHEEVLRISGLNTTYQFRGHPVPAVQDLSLSVRPGEVVGLVGESGSGKSTALKSILGMLRPPAEVAADEIALCGRDL
RALSAEENRRIRGGEMSMIFQDPINSFNPSWTIGSQFRRVLGLHRPDLNRNDYDDEIIRLLAGVGIDGRGKLKSYPFQFS
QGQLQRIMIAVACASKDLKVLLADEPTTSLDVTIEAQVLELLRRLRAERNLALVLVTHDLSVVAEMCDKVVVMYAGRVVE
VADVYQLFESPQHPYTEQLLKAIPHFPHDGQRLYAMRGAVPGLDEKVPGCAFAARCDRYLGEVCDTVKPTLAPTTTDGGG
VAACHLVAEPALARRASV

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=239, Percent_Identity=26.3598326359833, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI153792144, Length=222, Percent_Identity=26.1261261261261, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI150417984, Length=220, Percent_Identity=28.6363636363636, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1789963, Length=319, Percent_Identity=43.5736677115987, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI48994883, Length=307, Percent_Identity=39.413680781759, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI145693107, Length=284, Percent_Identity=40.1408450704225, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1787548, Length=337, Percent_Identity=35.6083086053413, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=42.1455938697318, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1787759, Length=304, Percent_Identity=38.4868421052632, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1787500, Length=289, Percent_Identity=35.9861591695502, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1789962, Length=306, Percent_Identity=36.6013071895425, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1787758, Length=275, Percent_Identity=36.7272727272727, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1789890, Length=239, Percent_Identity=37.2384937238494, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI48994997, Length=263, Percent_Identity=34.2205323193916, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787547, Length=267, Percent_Identity=32.2097378277154, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1786398, Length=271, Percent_Identity=31.3653136531365, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1789891, Length=238, Percent_Identity=34.0336134453782, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788225, Length=254, Percent_Identity=34.251968503937, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=31.6239316239316, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1789032, Length=258, Percent_Identity=25.968992248062, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI48995001, Length=271, Percent_Identity=29.8892988929889, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87081791, Length=263, Percent_Identity=28.1368821292776, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788644, Length=243, Percent_Identity=32.9218106995885, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787029, Length=244, Percent_Identity=29.0983606557377, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786703, Length=241, Percent_Identity=29.4605809128631, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787089, Length=264, Percent_Identity=31.4393939393939, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790162, Length=240, Percent_Identity=27.9166666666667, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1789672, Length=260, Percent_Identity=29.2307692307692, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081709, Length=256, Percent_Identity=26.953125, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789873, Length=227, Percent_Identity=29.5154185022026, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=29.9107142857143, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081834, Length=234, Percent_Identity=28.6324786324786, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787370, Length=248, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=29.7071129707113, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1786563, Length=241, Percent_Identity=29.045643153527, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786253, Length=209, Percent_Identity=30.622009569378, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786803, Length=237, Percent_Identity=26.1603375527426, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787143, Length=228, Percent_Identity=29.8245614035088, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786872, Length=260, Percent_Identity=30.3846153846154, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788165, Length=209, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790525, Length=242, Percent_Identity=26.0330578512397, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082267, Length=228, Percent_Identity=28.5087719298246, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787972, Length=241, Percent_Identity=31.1203319502075, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788002, Length=218, Percent_Identity=27.9816513761468, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=31.1627906976744, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=247, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17558664, Length=253, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=216, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=216, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=216, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573571, Length=240, Percent_Identity=28.75, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573573, Length=220, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85726357, Length=266, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 36994; Mature: 36863

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPEHEEVLRISGLNTTYQFRGHPVPAVQDLSLSVRPGEVVGLVGESGSGKSTALKSIL
CCCCCCHHHEEEECCCEEEEECCCCCCCHHCCEEEECCCCEEEEECCCCCCHHHHHHHHH
GMLRPPAEVAADEIALCGRDLRALSAEENRRIRGGEMSMIFQDPINSFNPSWTIGSQFRR
HHCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
VLGLHRPDLNRNDYDDEIIRLLAGVGIDGRGKLKSYPFQFSQGQLQRIMIAVACASKDLK
HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
VLLADEPTTSLDVTIEAQVLELLRRLRAERNLALVLVTHDLSVVAEMCDKVVVMYAGRVV
EEEECCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHH
EVADVYQLFESPQHPYTEQLLKAIPHFPHDGQRLYAMRGAVPGLDEKVPGCAFAARCDRY
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
LGEVCDTVKPTLAPTTTDGGGVAACHLVAEPALARRASV
HHHHHHHCCCCCCCCCCCCCCCEEHHHHHCHHHHHHCCC
>Mature Secondary Structure 
STPEHEEVLRISGLNTTYQFRGHPVPAVQDLSLSVRPGEVVGLVGESGSGKSTALKSIL
CCCCCHHHEEEECCCEEEEECCCCCCCHHCCEEEECCCCEEEEECCCCCCHHHHHHHHH
GMLRPPAEVAADEIALCGRDLRALSAEENRRIRGGEMSMIFQDPINSFNPSWTIGSQFRR
HHCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
VLGLHRPDLNRNDYDDEIIRLLAGVGIDGRGKLKSYPFQFSQGQLQRIMIAVACASKDLK
HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
VLLADEPTTSLDVTIEAQVLELLRRLRAERNLALVLVTHDLSVVAEMCDKVVVMYAGRVV
EEEECCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHH
EVADVYQLFESPQHPYTEQLLKAIPHFPHDGQRLYAMRGAVPGLDEKVPGCAFAARCDRY
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
LGEVCDTVKPTLAPTTTDGGGVAACHLVAEPALARRASV
HHHHHHHCCCCCCCCCCCCCCCEEHHHHHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]