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The map label for this gene is yliC [C]

Identifier: 119718312

GI number: 119718312

Start: 4323847

End: 4324812

Strand: Reverse

Name: yliC [C]

Synonym: Noca_4093

Alternate gene names: 119718312

Gene position: 4324812-4323847 (Counterclockwise)

Preceding gene: 119718313

Following gene: 119718311

Centisome position: 86.74

GC content: 67.91

Gene sequence:

>966_bases
ATGCTGAGGATGGCGACGTCGCGGCTCCTGTCCTCGATCCCGGTCCTGATCCTGATCTCGATCGTGGCCTTCACGCTCCT
CCGACTCGCCCCGGGTGACCCGGCCCTGCTGTCGGTCGGTCTCGAGGCTCCGCCCGAGGCGCTGGAGCGCGCCCGGCAGG
AGATGCGGCTGGACGACCCCGTCTGGGCCCAGTACTGGGCGTGGGTCACCGACGTCGTCCGGTTCGACTTCGGCACCTCC
TACACCGACAAGTCGCCGGTCACCGAGGTGATCGCCCATCGGCTGCCGACCACCCTGCAGCTGGCCGCGGTGGCGCTGCT
GTTCATCGTCGCGATCGGCCTGCCCCTCGGCGTCGTCTCGGCCCTGCGTGCCAACCGGTTCACCGACCAGCTGATCCGGG
TGGGCTCGCTGGCGGGCATCTCGGTGCCGAACTTCGTGGTCGCGCTCTTCTTGGTGCTCTCGTTCGGCTGGTGGTTCCCG
GGGATCATGCCGTACCAGGGCTTCGTGAGTCTCGGCGAAGATCCGGTGGAGAGCCTGAAGTACACCGTGCTTCCGGCGGT
CGCGCTCGCCGCTCCCCAGATCGGGCTCGTCGCCCGCCTGGCGCGGTCGAGCATGCTCGAGGTGCTCGGCCAGGACTACG
TGTCCGCGGCGCGTGCGATGGGCGTGCGCGAGCGGGTGATCATCTGGAAGGACACCCTCCGCAACGCGCTGCTCCCGGTC
GTCACCGTGCTCGGCGTGCAAGCGGGGTTCCTGCTCGGAGGCTCGGTGGTCGTGGAGACCGTCTTCGGCATTCCCGGCCT
CGGTCGGCTGCTCGTCGAGTCCTTCACCATCCGCGACTACCCGGTGACGATCGGCGTGATGATGTTCATCGCGGCTGTCT
TCGTCTTCATCAACATCATCGTCGACCTCCTCTACGGGGTGATCAACCCACGGATCCGGGTCGCCTACGGCTCCGGGAAG
GAATGA

Upstream 100 bases:

>100_bases
CGTGAGCAGTCTTGCGACGCAGGTCGTCGGTGGACCTGCGTGACCCCGGAGGCGGAATGAAGACGACAGCCAGCGCCGAC
GCGGTGGAGCGGGTGGGCAC

Downstream 100 bases:

>100_bases
GGATGACCCAGGTCCCTGCTGCGCCGGCGGTCGACCAGGCCCCCGGTGCACTCGTCGCCGCCGCGTCCGTCCACCGCGTG
GGTGAGGTGGGGCTGCTCCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MLRMATSRLLSSIPVLILISIVAFTLLRLAPGDPALLSVGLEAPPEALERARQEMRLDDPVWAQYWAWVTDVVRFDFGTS
YTDKSPVTEVIAHRLPTTLQLAAVALLFIVAIGLPLGVVSALRANRFTDQLIRVGSLAGISVPNFVVALFLVLSFGWWFP
GIMPYQGFVSLGEDPVESLKYTVLPAVALAAPQIGLVARLARSSMLEVLGQDYVSAARAMGVRERVIIWKDTLRNALLPV
VTVLGVQAGFLLGGSVVVETVFGIPGLGRLLVESFTIRDYPVTIGVMMFIAAVFVFINIIVDLLYGVINPRIRVAYGSGK
E

Sequences:

>Translated_321_residues
MLRMATSRLLSSIPVLILISIVAFTLLRLAPGDPALLSVGLEAPPEALERARQEMRLDDPVWAQYWAWVTDVVRFDFGTS
YTDKSPVTEVIAHRLPTTLQLAAVALLFIVAIGLPLGVVSALRANRFTDQLIRVGSLAGISVPNFVVALFLVLSFGWWFP
GIMPYQGFVSLGEDPVESLKYTVLPAVALAAPQIGLVARLARSSMLEVLGQDYVSAARAMGVRERVIIWKDTLRNALLPV
VTVLGVQAGFLLGGSVVVETVFGIPGLGRLLVESFTIRDYPVTIGVMMFIAAVFVFINIIVDLLYGVINPRIRVAYGSGK
E
>Mature_321_residues
MLRMATSRLLSSIPVLILISIVAFTLLRLAPGDPALLSVGLEAPPEALERARQEMRLDDPVWAQYWAWVTDVVRFDFGTS
YTDKSPVTEVIAHRLPTTLQLAAVALLFIVAIGLPLGVVSALRANRFTDQLIRVGSLAGISVPNFVVALFLVLSFGWWFP
GIMPYQGFVSLGEDPVESLKYTVLPAVALAAPQIGLVARLARSSMLEVLGQDYVSAARAMGVRERVIIWKDTLRNALLPV
VTVLGVQAGFLLGGSVVVETVFGIPGLGRLLVESFTIRDYPVTIGVMMFIAAVFVFINIIVDLLYGVINPRIRVAYGSGK
E

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=316, Percent_Identity=40.1898734177215, Blast_Score=237, Evalue=7e-64,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=37.6854599406528, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1789888, Length=324, Percent_Identity=37.3456790123457, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=34.7003154574132, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=38.5350318471338, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=29.6703296703297, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1788504, Length=279, Percent_Identity=30.1075268817204, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34863; Mature: 34863

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRMATSRLLSSIPVLILISIVAFTLLRLAPGDPALLSVGLEAPPEALERARQEMRLDDP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHCCCCCH
VWAQYWAWVTDVVRFDFGTSYTDKSPVTEVIAHRLPTTLQLAAVALLFIVAIGLPLGVVS
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ALRANRFTDQLIRVGSLAGISVPNFVVALFLVLSFGWWFPGIMPYQGFVSLGEDPVESLK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHH
YTVLPAVALAAPQIGLVARLARSSMLEVLGQDYVSAARAMGVRERVIIWKDTLRNALLPV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHH
VTVLGVQAGFLLGGSVVVETVFGIPGLGRLLVESFTIRDYPVTIGVMMFIAAVFVFINII
HHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VDLLYGVINPRIRVAYGSGKE
HHHHHHHHCCCEEEEECCCCC
>Mature Secondary Structure
MLRMATSRLLSSIPVLILISIVAFTLLRLAPGDPALLSVGLEAPPEALERARQEMRLDDP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHCCCCCH
VWAQYWAWVTDVVRFDFGTSYTDKSPVTEVIAHRLPTTLQLAAVALLFIVAIGLPLGVVS
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ALRANRFTDQLIRVGSLAGISVPNFVVALFLVLSFGWWFPGIMPYQGFVSLGEDPVESLK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHH
YTVLPAVALAAPQIGLVARLARSSMLEVLGQDYVSAARAMGVRERVIIWKDTLRNALLPV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHH
VTVLGVQAGFLLGGSVVVETVFGIPGLGRLLVESFTIRDYPVTIGVMMFIAAVFVFINII
HHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VDLLYGVINPRIRVAYGSGKE
HHHHHHHHCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]