Click here to switch to the map view.

The map label for this gene is ugpA [C]

Identifier: 119717904

GI number: 119717904

Start: 3904792

End: 3905643

Strand: Reverse

Name: ugpA [C]

Synonym: Noca_3682

Alternate gene names: 119717904

Gene position: 3905643-3904792 (Counterclockwise)

Preceding gene: 119717905

Following gene: 119717903

Centisome position: 78.33

GC content: 61.5

Gene sequence:

>852_bases
GTGAGTGTCCGAATCCGCATGATGCTGCCATTGGTGGTGGTGCTGGCCGCCGTGGTCGGGTACCCGCTCGCCTATAGCTT
CTACCTCTCCCTCACGGACTACAAGATCACCAGCCGGGGGGACGTAGCCTTCCGTGGCCTGGAGCAGTACGACAATGCAC
TGAACGATCCTGACTACGTCCAAGCGCTGCTTACGACCGGGACGTTCGTCGTCTCCGCGGTCGTGCTCGAGCTTGCTATC
GGCATGCTATTGGCACTCGCGCTGCAGCAGCAACGGTGGGTCCGCAACCTCAGTCGCTCGTTCCTGCTCGCGCCGATGTT
CATCACCCCGATCGCCGTCGGTCTGATGTTCCGCTTCCTGCTCAACAGCCAGTTGGGGGCGATCCCGTCGCTCCTGAACG
GGCTGGGCGTCTCCATGGACTTCTTCGGCAGTGGTACGGCGCTGTGGACCATCGTGGCCATTGACGTCTGGCAGTGGACT
CCTTTCATGATGCTGATGTTGCTCGCCGGCTTGGAGGGACTACCGAAGCAGCCATTCGAGGCGGCCCGGGTCGATGGTGC
CAGCGCGCTGTTCACGTTCCGCAAAGTCACGATTCCGCTGTTGCGACCTGTCATTGTCGTCGCAGTTCTGATCCGCAGCT
TGGACGCGCTCAAGGTGTTCGAGTACGTATACGCCACTACTCGCGGCGGGCCGGGAACCGAGACGCAGACCATTCAGTAC
CTGATCTACAACACTGGCATCACCTTCTTCCGTCTCGCCTCAGCCTCTGCGATGGCCTACCTGTTGCTGGCCGCCGTGGT
GGTGCTCGCGGTTCTCCTGTTCGCCCGGATTCGACGAGGAGGAGTCCTATGA

Upstream 100 bases:

>100_bases
GACGCCCTCTCTGCGGCCCAGGAGCAGGCGACTCGGATCCAGTCCAGCTGAGCCTGGGCCGATCTACGTACCGTCAGGAA
TCAGGGAGAGGTAGCAGCTG

Downstream 100 bases:

>100_bases
GCGACTCGACGTCGTCCCGCCGCTTCGCGACCCGGTTCGCGCCCAGTGCCGATCGCAACGCCTCGCGCGGCCCACGGCGG
TCGCAGGACGGCTCCCTCCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSVRIRMMLPLVVVLAAVVGYPLAYSFYLSLTDYKITSRGDVAFRGLEQYDNALNDPDYVQALLTTGTFVVSAVVLELAI
GMLLALALQQQRWVRNLSRSFLLAPMFITPIAVGLMFRFLLNSQLGAIPSLLNGLGVSMDFFGSGTALWTIVAIDVWQWT
PFMMLMLLAGLEGLPKQPFEAARVDGASALFTFRKVTIPLLRPVIVVAVLIRSLDALKVFEYVYATTRGGPGTETQTIQY
LIYNTGITFFRLASASAMAYLLLAAVVVLAVLLFARIRRGGVL

Sequences:

>Translated_283_residues
MSVRIRMMLPLVVVLAAVVGYPLAYSFYLSLTDYKITSRGDVAFRGLEQYDNALNDPDYVQALLTTGTFVVSAVVLELAI
GMLLALALQQQRWVRNLSRSFLLAPMFITPIAVGLMFRFLLNSQLGAIPSLLNGLGVSMDFFGSGTALWTIVAIDVWQWT
PFMMLMLLAGLEGLPKQPFEAARVDGASALFTFRKVTIPLLRPVIVVAVLIRSLDALKVFEYVYATTRGGPGTETQTIQY
LIYNTGITFFRLASASAMAYLLLAAVVVLAVLLFARIRRGGVL
>Mature_282_residues
SVRIRMMLPLVVVLAAVVGYPLAYSFYLSLTDYKITSRGDVAFRGLEQYDNALNDPDYVQALLTTGTFVVSAVVLELAIG
MLLALALQQQRWVRNLSRSFLLAPMFITPIAVGLMFRFLLNSQLGAIPSLLNGLGVSMDFFGSGTALWTIVAIDVWQWTP
FMMLMLLAGLEGLPKQPFEAARVDGASALFTFRKVTIPLLRPVIVVAVLIRSLDALKVFEYVYATTRGGPGTETQTIQYL
IYNTGITFFRLASASAMAYLLLAAVVVLAVLLFARIRRGGVL

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=244, Percent_Identity=30.327868852459, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787570, Length=270, Percent_Identity=25.1851851851852, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31074; Mature: 30942

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVRIRMMLPLVVVLAAVVGYPLAYSFYLSLTDYKITSRGDVAFRGLEQYDNALNDPDYV
CEEHHHHHHHHHHHHHHHHHHHHHHHHEEHCCEEEECCCCHHHHHHHHHHHCCCCHHHH
QALLTTGTFVVSAVVLELAIGMLLALALQQQRWVRNLSRSFLLAPMFITPIAVGLMFRFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNSQLGAIPSLLNGLGVSMDFFGSGTALWTIVAIDVWQWTPFMMLMLLAGLEGLPKQPFE
HHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
AARVDGASALFTFRKVTIPLLRPVIVVAVLIRSLDALKVFEYVYATTRGGPGTETQTIQY
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEE
LIYNTGITFFRLASASAMAYLLLAAVVVLAVLLFARIRRGGVL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]