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The map label for this gene is ycjN [C]

Identifier: 119717905

GI number: 119717905

Start: 3905693

End: 3906991

Strand: Reverse

Name: ycjN [C]

Synonym: Noca_3683

Alternate gene names: 119717905

Gene position: 3906991-3905693 (Counterclockwise)

Preceding gene: 119717906

Following gene: 119717904

Centisome position: 78.36

GC content: 64.05

Gene sequence:

>1299_bases
ATGAAGAATCGAACTGTGCGCCGCACGGTGGCTGTCACAGCTGCCGTCGCGGCGCTGTCCCTGACGGCGGCATGCTCTGG
GGGCAAGGGTGCGCCGGGGTCCGAGACCCCCAGCGGTGACGGAGACGTGAGCTCGAACGTCGAAGGGACCGTCCGGGTCC
TCATGGAGGGCGTGCCCGACACCGACATCGTCGAGGGGATGATCGGCGAGTTCAACGAGCAGTACCCCAACGTGAAGGTC
CAGATCGAGACCGCCGTCTACGACCAGATGCGTGACAAGTACGTGGCGTCCTTCACCGCACCTGAGTCGTCCTACGATCT
CGCGATCATCGACAACCCCTGGATGGGCGACTTCGCGAAGGCCGGATTCCTGACCCCACTGGACTCGTACATCGAGTCGA
CGTCGGGTTACGACTACGAGGACTTCGCCGAACCTCTGCGCCAGATCAACGAGGTCGACGGCAAGACCTACGGTATTCCG
TTCTACAACTACGGCTTGGGGCTGATCTACCGCACCGATCTCCTCTCGGCAGCGCCCTCCACACTGGATGAACTCGTTGC
TGCCGCCCAGGAGAACACCACTGACACTCGGGCTGGCATTGCGATGCAGCCCCAGCGCGGCTACAAGGCATTTGAGGAAT
GGGCCAACTTCCTCTTTGCCGCTGGTGGCTCCATCTACGACGACGAAGGAAATCTCAGCCTGGACACCCCCGAGGCGAAG
GAGGCCCTCGAGACCTACATCGAGCTCTACGAGACCGCGGCTCCCGCCAGCAGCCTCAACTGGGCCTTCGACGAGGCGCT
GCGATCCGTGAGCAGCGACAAGGCGGCCATGATGGTCTCCTACAACTGGATGCTCCCCACCCTCAACGCTGACGACTCGC
CCGCCGGCGATCTCGCTGGCAAGTTCGCTTTGGCGACCATGCCGGGCGGCAAGCAAGTCCTCGGTTCATGGAGTTGGGCC
ATCCCCTCCAACAGTGAGACGGACGATGCCGACTGGGCGTTCATCTCTTGGCTGACCTCTGCCGACGGTGAGAAGCAGCG
AGTGGAGGCCGGTGGCGCACCCGTCCGGCAGAGCGTCCTGACTGATCCGCAGGTGGCGGCCCAGGGCTTCGGTGCTGACT
ACTACGCCACTGTCGGTGACATCCTCGCCAACTCGGCCCCCCTGTGCCAGGGCGCCAACTGCGACGAGATGATCCAGGCG
GTCGGAACCGAGCTCAGCGCCGCAGTCTCCGGACAGAAGAGCGTGGCAGACGCCCTCTCTGCGGCCCAGGAGCAGGCGAC
TCGGATCCAGTCCAGCTGA

Upstream 100 bases:

>100_bases
CGTTCATGGATTGACCACACGTCGCAAGGCCCATCGGTGCGACCGATGTCGCAGCACGATCTCGGCAGCAATGGAGCAGT
ACAGGTAAAGGAGAGGTGCC

Downstream 100 bases:

>100_bases
GCCTGGGCCGATCTACGTACCGTCAGGAATCAGGGAGAGGTAGCAGCTGGTGAGTGTCCGAATCCGCATGATGCTGCCAT
TGGTGGTGGTGCTGGCCGCC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MKNRTVRRTVAVTAAVAALSLTAACSGGKGAPGSETPSGDGDVSSNVEGTVRVLMEGVPDTDIVEGMIGEFNEQYPNVKV
QIETAVYDQMRDKYVASFTAPESSYDLAIIDNPWMGDFAKAGFLTPLDSYIESTSGYDYEDFAEPLRQINEVDGKTYGIP
FYNYGLGLIYRTDLLSAAPSTLDELVAAAQENTTDTRAGIAMQPQRGYKAFEEWANFLFAAGGSIYDDEGNLSLDTPEAK
EALETYIELYETAAPASSLNWAFDEALRSVSSDKAAMMVSYNWMLPTLNADDSPAGDLAGKFALATMPGGKQVLGSWSWA
IPSNSETDDADWAFISWLTSADGEKQRVEAGGAPVRQSVLTDPQVAAQGFGADYYATVGDILANSAPLCQGANCDEMIQA
VGTELSAAVSGQKSVADALSAAQEQATRIQSS

Sequences:

>Translated_432_residues
MKNRTVRRTVAVTAAVAALSLTAACSGGKGAPGSETPSGDGDVSSNVEGTVRVLMEGVPDTDIVEGMIGEFNEQYPNVKV
QIETAVYDQMRDKYVASFTAPESSYDLAIIDNPWMGDFAKAGFLTPLDSYIESTSGYDYEDFAEPLRQINEVDGKTYGIP
FYNYGLGLIYRTDLLSAAPSTLDELVAAAQENTTDTRAGIAMQPQRGYKAFEEWANFLFAAGGSIYDDEGNLSLDTPEAK
EALETYIELYETAAPASSLNWAFDEALRSVSSDKAAMMVSYNWMLPTLNADDSPAGDLAGKFALATMPGGKQVLGSWSWA
IPSNSETDDADWAFISWLTSADGEKQRVEAGGAPVRQSVLTDPQVAAQGFGADYYATVGDILANSAPLCQGANCDEMIQA
VGTELSAAVSGQKSVADALSAAQEQATRIQSS
>Mature_432_residues
MKNRTVRRTVAVTAAVAALSLTAACSGGKGAPGSETPSGDGDVSSNVEGTVRVLMEGVPDTDIVEGMIGEFNEQYPNVKV
QIETAVYDQMRDKYVASFTAPESSYDLAIIDNPWMGDFAKAGFLTPLDSYIESTSGYDYEDFAEPLRQINEVDGKTYGIP
FYNYGLGLIYRTDLLSAAPSTLDELVAAAQENTTDTRAGIAMQPQRGYKAFEEWANFLFAAGGSIYDDEGNLSLDTPEAK
EALETYIELYETAAPASSLNWAFDEALRSVSSDKAAMMVSYNWMLPTLNADDSPAGDLAGKFALATMPGGKQVLGSWSWA
IPSNSETDDADWAFISWLTSADGEKQRVEAGGAPVRQSVLTDPQVAAQGFGADYYATVGDILANSAPLCQGANCDEMIQA
VGTELSAAVSGQKSVADALSAAQEQATRIQSS

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45975; Mature: 45975

Theoretical pI: Translated: 3.86; Mature: 3.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRTVRRTVAVTAAVAALSLTAACSGGKGAPGSETPSGDGDVSSNVEGTVRVLMEGVPD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
TDIVEGMIGEFNEQYPNVKVQIETAVYDQMRDKYVASFTAPESSYDLAIIDNPWMGDFAK
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCHHHH
AGFLTPLDSYIESTSGYDYEDFAEPLRQINEVDGKTYGIPFYNYGLGLIYRTDLLSAAPS
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCHHHCCCHHEEHHHHHHCCHH
TLDELVAAAQENTTDTRAGIAMQPQRGYKAFEEWANFLFAAGGSIYDDEGNLSLDTPEAK
HHHHHHHHHHCCCCCHHCCCEECCHHHHHHHHHHHHHHHHCCCCEECCCCCEEECCHHHH
EALETYIELYETAAPASSLNWAFDEALRSVSSDKAAMMVSYNWMLPTLNADDSPAGDLAG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCHHCC
KFALATMPGGKQVLGSWSWAIPSNSETDDADWAFISWLTSADGEKQRVEAGGAPVRQSVL
CEEEEECCCCHHHHCCEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCHHHHHHC
TDPQVAAQGFGADYYATVGDILANSAPLCQGANCDEMIQAVGTELSAAVSGQKSVADALS
CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
AAQEQATRIQSS
HHHHHHHHHCCC
>Mature Secondary Structure
MKNRTVRRTVAVTAAVAALSLTAACSGGKGAPGSETPSGDGDVSSNVEGTVRVLMEGVPD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
TDIVEGMIGEFNEQYPNVKVQIETAVYDQMRDKYVASFTAPESSYDLAIIDNPWMGDFAK
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCHHHH
AGFLTPLDSYIESTSGYDYEDFAEPLRQINEVDGKTYGIPFYNYGLGLIYRTDLLSAAPS
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCHHHCCCHHEEHHHHHHCCHH
TLDELVAAAQENTTDTRAGIAMQPQRGYKAFEEWANFLFAAGGSIYDDEGNLSLDTPEAK
HHHHHHHHHHCCCCCHHCCCEECCHHHHHHHHHHHHHHHHCCCCEECCCCCEEECCHHHH
EALETYIELYETAAPASSLNWAFDEALRSVSSDKAAMMVSYNWMLPTLNADDSPAGDLAG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCHHCC
KFALATMPGGKQVLGSWSWAIPSNSETDDADWAFISWLTSADGEKQRVEAGGAPVRQSVL
CEEEEECCCCHHHHCCEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCHHHHHHC
TDPQVAAQGFGADYYATVGDILANSAPLCQGANCDEMIQAVGTELSAAVSGQKSVADALS
CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
AAQEQATRIQSS
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]