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The map label for this gene is ykoU [H]

Identifier: 119717887

GI number: 119717887

Start: 3888249

End: 3889331

Strand: Reverse

Name: ykoU [H]

Synonym: Noca_3665

Alternate gene names: 119717887

Gene position: 3889331-3888249 (Counterclockwise)

Preceding gene: 119717888

Following gene: 119717886

Centisome position: 78.01

GC content: 72.21

Gene sequence:

>1083_bases
ATGGCGAAGGTGAGCGCGGCCGAGGTCCGGGCGGGCGGGCGCGCCGTCCGCGTGTCCAGCCCCGACCGGGTCATCTACGA
GGCGACCGAGCGGACGCCCGAGGTGACCAAGCTGATGGTGGCCGAGTACTTCGCGAGCGTCGAGGACGGGCTGATGCGCG
CGCTGCGCGACCGGCCCACGGCCCTGGAGCGCTGGACCTCGGGGGTGCGTGAGGGGATGCGGCTGGCGACCGGACCGCAG
GACAAGGACGCCGACGCGTTCTACCAGAAGCGGGTGCCGAAGGGTGCACCCGACTACGTCGACACGGTCCAGGTCACCTT
CCCGTCAGGGCGTACGGCGGAGGAGATCTGCCCCACGGAGATCGCCGTCCCGGTGTGGTGCGCGCACATGGGCACGCTGG
TCTTCCACCCCTGGCCGGTCCGCCGGGCCGACGTGGACCGCCCCGACGAGCTGCGCATCGACCTCGATCCCCAGCCCGGC
ACCTCGTTCGCCGACGCGGTCCGGGTGGCGGGGGTGGCGCGGGAGCTCCTCGAGGAGCTCGGCCTGGTGGGCTACCCGAA
GACGTCGGGCAACCGCGGGGTGCACATCTACGTGCGGATCGAGCCGCGCTGGGAGTTCACCGACGTCCGGCACGCCGCGA
TCGGCTTCGGCCGCGAGCTGGCGCGCCGCGACGAGGGCGTGACGGTGGAGTGGTGGAAGGAGGAGCGCGGTGAGCGGATC
TTCGTCGACTTCAACCAGAACAACCGCGACCGCACCATCGCCTCGGCGTACTCCCTGCGTCCGCTGCCCGGCGCACCCGT
CTCCACCCCGGTCACCTGGGACGAGCTGGCCGGCATCGGCGACCCCCGTGACTACAACCTGTTCACGGTCCCGGATCGGG
TGGCCGACGGCGATCCGTGGGCGAGCATCGACGACACGGCGTACTCCCTGGACCCGCTGCTGCGGCTCTGGGAGGACCTG
CCCGGCGGCGAGCTGAGCTTCCCGCCGGACTACCCCAAGATGCCGGGCGAGCCGCCGCGGGTGCAGCCGAGCAAGAAGGT
CGCCGCGCACTGGGACGAGGAGGGCAACCGGATCGACTCCTGA

Upstream 100 bases:

>100_bases
CCCCGGTGTCCGGATCAAACTTGGTCCGTGCGACCGATGACCTGACGATCGGTCGATTTCGACCGGACCTGAGGAGTCCG
GACCCGGATAGCCTCCCTCC

Downstream 100 bases:

>100_bases
GCCGGTTTGAACGCGGATCCGAAGGGGAATCTCGACGTCAGATCAGTCGAGAGAGGAGAAGGGATCCGATGTCCGCGCGC
AACCGGGTGGTGTCGGTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MAKVSAAEVRAGGRAVRVSSPDRVIYEATERTPEVTKLMVAEYFASVEDGLMRALRDRPTALERWTSGVREGMRLATGPQ
DKDADAFYQKRVPKGAPDYVDTVQVTFPSGRTAEEICPTEIAVPVWCAHMGTLVFHPWPVRRADVDRPDELRIDLDPQPG
TSFADAVRVAGVARELLEELGLVGYPKTSGNRGVHIYVRIEPRWEFTDVRHAAIGFGRELARRDEGVTVEWWKEERGERI
FVDFNQNNRDRTIASAYSLRPLPGAPVSTPVTWDELAGIGDPRDYNLFTVPDRVADGDPWASIDDTAYSLDPLLRLWEDL
PGGELSFPPDYPKMPGEPPRVQPSKKVAAHWDEEGNRIDS

Sequences:

>Translated_360_residues
MAKVSAAEVRAGGRAVRVSSPDRVIYEATERTPEVTKLMVAEYFASVEDGLMRALRDRPTALERWTSGVREGMRLATGPQ
DKDADAFYQKRVPKGAPDYVDTVQVTFPSGRTAEEICPTEIAVPVWCAHMGTLVFHPWPVRRADVDRPDELRIDLDPQPG
TSFADAVRVAGVARELLEELGLVGYPKTSGNRGVHIYVRIEPRWEFTDVRHAAIGFGRELARRDEGVTVEWWKEERGERI
FVDFNQNNRDRTIASAYSLRPLPGAPVSTPVTWDELAGIGDPRDYNLFTVPDRVADGDPWASIDDTAYSLDPLLRLWEDL
PGGELSFPPDYPKMPGEPPRVQPSKKVAAHWDEEGNRIDS
>Mature_359_residues
AKVSAAEVRAGGRAVRVSSPDRVIYEATERTPEVTKLMVAEYFASVEDGLMRALRDRPTALERWTSGVREGMRLATGPQD
KDADAFYQKRVPKGAPDYVDTVQVTFPSGRTAEEICPTEIAVPVWCAHMGTLVFHPWPVRRADVDRPDELRIDLDPQPGT
SFADAVRVAGVARELLEELGLVGYPKTSGNRGVHIYVRIEPRWEFTDVRHAAIGFGRELARRDEGVTVEWWKEERGERIF
VDFNQNNRDRTIASAYSLRPLPGAPVSTPVTWDELAGIGDPRDYNLFTVPDRVADGDPWASIDDTAYSLDPLLRLWEDLP
GGELSFPPDYPKMPGEPPRVQPSKKVAAHWDEEGNRIDS

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 40292; Mature: 40160

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVSAAEVRAGGRAVRVSSPDRVIYEATERTPEVTKLMVAEYFASVEDGLMRALRDRPT
CCCCCHHHHCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ALERWTSGVREGMRLATGPQDKDADAFYQKRVPKGAPDYVDTVQVTFPSGRTAEEICPTE
HHHHHHHHHHHCCEECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHCCCH
IAVPVWCAHMGTLVFHPWPVRRADVDRPDELRIDLDPQPGTSFADAVRVAGVARELLEEL
HHHHHHHHHHCHHEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
GLVGYPKTSGNRGVHIYVRIEPRWEFTDVRHAAIGFGRELARRDEGVTVEWWKEERGERI
CCEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE
FVDFNQNNRDRTIASAYSLRPLPGAPVSTPVTWDELAGIGDPRDYNLFTVPDRVADGDPW
EEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCC
ASIDDTAYSLDPLLRLWEDLPGGELSFPPDYPKMPGEPPRVQPSKKVAAHWDEEGNRIDS
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AKVSAAEVRAGGRAVRVSSPDRVIYEATERTPEVTKLMVAEYFASVEDGLMRALRDRPT
CCCCHHHHCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ALERWTSGVREGMRLATGPQDKDADAFYQKRVPKGAPDYVDTVQVTFPSGRTAEEICPTE
HHHHHHHHHHHCCEECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHCCCH
IAVPVWCAHMGTLVFHPWPVRRADVDRPDELRIDLDPQPGTSFADAVRVAGVARELLEEL
HHHHHHHHHHCHHEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
GLVGYPKTSGNRGVHIYVRIEPRWEFTDVRHAAIGFGRELARRDEGVTVEWWKEERGERI
CCEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE
FVDFNQNNRDRTIASAYSLRPLPGAPVSTPVTWDELAGIGDPRDYNLFTVPDRVADGDPW
EEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCC
ASIDDTAYSLDPLLRLWEDLPGGELSFPPDYPKMPGEPPRVQPSKKVAAHWDEEGNRIDS
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]