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The map label for this gene is csgD [C]

Identifier: 119717886

GI number: 119717886

Start: 3887533

End: 3888180

Strand: Reverse

Name: csgD [C]

Synonym: Noca_3664

Alternate gene names: 119717886

Gene position: 3888180-3887533 (Counterclockwise)

Preceding gene: 119717887

Following gene: 119717885

Centisome position: 77.98

GC content: 71.45

Gene sequence:

>648_bases
ATGTCCGCGCGCAACCGGGTGGTGTCGGTGATGGTCCTGTCCGAGCAGCCCGTGATCGCAGCCGGGGTCGAGCATCTGCT
CGCCCGGTTCCCGGACCGGGTCGTCGTCGTCGACGCAGCGGACGCGGATGCCGACACCGTGGTGGTGTACGACGTGTTCG
GCCTCTACGTCGGCGAGCAGGACGACTTCGAGCGGTTGGTCAAGGAGCACCCGGACCGGGTGCTCGCCCTCTCCAGGGTC
CTCCAGCCGGGACTGACCGCGCGGGCCCTGGACCTCGGCGCGGTCGCGTCGATCTCCGTGGGCCTGCACGCGGAGGAGCT
CGTGGCCGCGATCGAGGCCTTCGCCGCTGGGCACCTGCAGGACGGCTCCCAGGCGGACCTGGACAACCAGGCCGACCGGC
GCCGCCAGCTGGGGCGTGACGTCAACCTGACTCCGCGCGAGCAGGACGTCCTCGGGCTGATCGTCGCCGGCTGCTCCAAC
GAGGAGCTGGCGGCCGAGCTCTACCTCAGCATCAACACCGTCAAGAGCCTGATCAGGTCGGTCTACCGCAAGCTCGAGGT
CACCAGCCGCGCCCAGGCCGTCGCCTGGGGCGTCGACCACGGCTTCCCGTCCGCGGGCGAACGCGGGCAGGACGCCCCCG
AGGCGTGA

Upstream 100 bases:

>100_bases
GGGACGAGGAGGGCAACCGGATCGACTCCTGAGCCGGTTTGAACGCGGATCCGAAGGGGAATCTCGACGTCAGATCAGTC
GAGAGAGGAGAAGGGATCCG

Downstream 100 bases:

>100_bases
CCCGGCGTCCGCACCCGCCGCGCGACGAGGGAAAGGCCCGCCCCGCCTTCCTGGAGTGATCCAAGCGCGCGGAGCGGGCC
TCTCGGACCGACCGGTGGCG

Product: regulatory protein LuxR

Products: NA

Alternate protein names: Regulatory Protein LuxR; Two Component LuxR Family Transcriptional Regulator; Two Component Transcriptional Regulator LuxR Family; Two Component Response Regulator; Two-Component System Regulator LlrD; Two-Component Response Regulator; Two-Component Response Transcriptional Regulator; LuxR Family Two Component Transcriptional Regulator

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSARNRVVSVMVLSEQPVIAAGVEHLLARFPDRVVVVDAADADADTVVVYDVFGLYVGEQDDFERLVKEHPDRVLALSRV
LQPGLTARALDLGAVASISVGLHAEELVAAIEAFAAGHLQDGSQADLDNQADRRRQLGRDVNLTPREQDVLGLIVAGCSN
EELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVAWGVDHGFPSAGERGQDAPEA

Sequences:

>Translated_215_residues
MSARNRVVSVMVLSEQPVIAAGVEHLLARFPDRVVVVDAADADADTVVVYDVFGLYVGEQDDFERLVKEHPDRVLALSRV
LQPGLTARALDLGAVASISVGLHAEELVAAIEAFAAGHLQDGSQADLDNQADRRRQLGRDVNLTPREQDVLGLIVAGCSN
EELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVAWGVDHGFPSAGERGQDAPEA
>Mature_214_residues
SARNRVVSVMVLSEQPVIAAGVEHLLARFPDRVVVVDAADADADTVVVYDVFGLYVGEQDDFERLVKEHPDRVLALSRVL
QPGLTARALDLGAVASISVGLHAEELVAAIEAFAAGHLQDGSQADLDNQADRRRQLGRDVNLTPREQDVLGLIVAGCSNE
ELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVAWGVDHGFPSAGERGQDAPEA

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23119; Mature: 22988

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARNRVVSVMVLSEQPVIAAGVEHLLARFPDRVVVVDAADADADTVVVYDVFGLYVGEQ
CCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEHHHHCCCH
DDFERLVKEHPDRVLALSRVLQPGLTARALDLGAVASISVGLHAEELVAAIEAFAAGHLQ
HHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
DGSQADLDNQADRRRQLGRDVNLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRS
CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VYRKLEVTSRAQAVAWGVDHGFPSAGERGQDAPEA
HHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SARNRVVSVMVLSEQPVIAAGVEHLLARFPDRVVVVDAADADADTVVVYDVFGLYVGEQ
CCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEHHHHCCCH
DDFERLVKEHPDRVLALSRVLQPGLTARALDLGAVASISVGLHAEELVAAIEAFAAGHLQ
HHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
DGSQADLDNQADRRRQLGRDVNLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRS
CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
VYRKLEVTSRAQAVAWGVDHGFPSAGERGQDAPEA
HHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA