| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717807
Identifier: 119717807
GI number: 119717807
Start: 3802381
End: 3803649
Strand: Reverse
Name: 119717807
Synonym: Noca_3585
Alternate gene names: NA
Gene position: 3803649-3802381 (Counterclockwise)
Preceding gene: 119717811
Following gene: 119717806
Centisome position: 76.29
GC content: 75.89
Gene sequence:
>1269_bases ATGACTTCGCTGCTCACCGGCTCGGCCGCCGCCCGCCTCGCAGGCGCGGACCGCTCGGACCCCCGCCACCGGCGACCCCT GGTGCTGGTCGCGGTCCTCGGCGGGGCGAGCGCGGCGCTGGCGACCCTCCTGATCTGCCTGGCCGTCGGAGTCGTGGGCT GGTTCCTGGCTGACGCGGGCGCACACGGAACCCCACGCGACGGACTGCGGGTGGGGGCGCTCGGCTGGCTGCTGGCCCAC GGCTCCGGTATCCACGTCGACGGCGTCGCGGTGACCGTCGTACCCCTCGGCCTGACGGCGCTGGCCGCCTGGGCCGTGTG GCGCCTCGGGCACCGGGTCGGCGACTCGGTGTCTGGCCACGGACCCGACGCGGACCGGATCGCCGACGGTGAGCGCGACT GGACGGTCCCGACCGCGGCTGCCGCGTTCTTCGCCGGCTACCTGCTCGTGGCCCTCGTCACGTTCCGCCTCGCGGCCACC GCCGAGACCGCACCCTCGCTGCCGCGGGTGGTCGCCGGATCGCTGCTGCTGTGCGCCACGTTCGGGCTGGTCGCGATCGC GGTGGGCTCGGGGCGCGCGGCGATCTGGGCCGCGTTCGTCCCCGCCTCGGTGCGGGCCGCGGGCGCCGCCTGCCTGCGGG TCCTCGGCGGCTACCTCGCGCTCTCGGCGCTGGTCTTCCTGGTCGCGTTCGCGCTGGACTTCGGTACGGCGGCCAACGTG ATGTCCCGGCTGCACCTGAGCGCCGGCGACGGCACCGTCTACGCGGCGCTGACCGCGACCCTGGTCCCCAACGCTGCGGT GTTCACCGGCTCCTACCTGCTCGGCCCGGGCTTCGCGGTGGGCGTCGACACACTGGTGTCCCCGACCGGCGTCGCGCTCG GCCCGCTGCCGATGTTCCCGCTGCTCGCCGCGCTCCCGGCGAACGGACCGACCCCGGCCTGGACGGCGTACCTCCTCGCG GTGCCGCCGCTGGTCGCCGCTGCCGCCGTCGCCCGCTCGCAGCGCCGCTACCCGACGCTGCGCTGGGACCACGGAGCCCT GCGCGGTTGCGTGGGCGGCGCGCTGGCCGGACTCCTGCTCGGGCTGCTCGCCGTGGTCGCTGGAGGGGCCGTCGGGCCGG GCCGGATGCGCGAGGTCGGACCGTTCGCGTTCGACGTGCTCGTGCACGCGATCACCGCCTTCGGCCTCGGCGGCCTGGTC GGCGGCGTTCTCATGACCTGGTGGCAGCGTCGGACCCATCGCCGCGGTTCCCTAGAATCCACCGCGTGA
Upstream 100 bases:
>100_bases TCCCTCATGGCGACGTCCACGGTAGCCCGATCGGGACATCCCGGCCGAACCGGCGTGGGAGCCCGGATCGGCCTGCCCGG GCGGTGATGATGGCGGAGCC
Downstream 100 bases:
>100_bases CCCCACGCCGCCCCGCTCGTCTCGTGGTGCTCGTGTCCGGGTCCGGGACCAACCTCCAGGCGTTGCTCGACGCGTGCGCC GACCCGTCGTACGGCGCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MTSLLTGSAAARLAGADRSDPRHRRPLVLVAVLGGASAALATLLICLAVGVVGWFLADAGAHGTPRDGLRVGALGWLLAH GSGIHVDGVAVTVVPLGLTALAAWAVWRLGHRVGDSVSGHGPDADRIADGERDWTVPTAAAAFFAGYLLVALVTFRLAAT AETAPSLPRVVAGSLLLCATFGLVAIAVGSGRAAIWAAFVPASVRAAGAACLRVLGGYLALSALVFLVAFALDFGTAANV MSRLHLSAGDGTVYAALTATLVPNAAVFTGSYLLGPGFAVGVDTLVSPTGVALGPLPMFPLLAALPANGPTPAWTAYLLA VPPLVAAAAVARSQRRYPTLRWDHGALRGCVGGALAGLLLGLLAVVAGGAVGPGRMREVGPFAFDVLVHAITAFGLGGLV GGVLMTWWQRRTHRRGSLESTA
Sequences:
>Translated_422_residues MTSLLTGSAAARLAGADRSDPRHRRPLVLVAVLGGASAALATLLICLAVGVVGWFLADAGAHGTPRDGLRVGALGWLLAH GSGIHVDGVAVTVVPLGLTALAAWAVWRLGHRVGDSVSGHGPDADRIADGERDWTVPTAAAAFFAGYLLVALVTFRLAAT AETAPSLPRVVAGSLLLCATFGLVAIAVGSGRAAIWAAFVPASVRAAGAACLRVLGGYLALSALVFLVAFALDFGTAANV MSRLHLSAGDGTVYAALTATLVPNAAVFTGSYLLGPGFAVGVDTLVSPTGVALGPLPMFPLLAALPANGPTPAWTAYLLA VPPLVAAAAVARSQRRYPTLRWDHGALRGCVGGALAGLLLGLLAVVAGGAVGPGRMREVGPFAFDVLVHAITAFGLGGLV GGVLMTWWQRRTHRRGSLESTA >Mature_421_residues TSLLTGSAAARLAGADRSDPRHRRPLVLVAVLGGASAALATLLICLAVGVVGWFLADAGAHGTPRDGLRVGALGWLLAHG SGIHVDGVAVTVVPLGLTALAAWAVWRLGHRVGDSVSGHGPDADRIADGERDWTVPTAAAAFFAGYLLVALVTFRLAATA ETAPSLPRVVAGSLLLCATFGLVAIAVGSGRAAIWAAFVPASVRAAGAACLRVLGGYLALSALVFLVAFALDFGTAANVM SRLHLSAGDGTVYAALTATLVPNAAVFTGSYLLGPGFAVGVDTLVSPTGVALGPLPMFPLLAALPANGPTPAWTAYLLAV PPLVAAAAVARSQRRYPTLRWDHGALRGCVGGALAGLLLGLLAVVAGGAVGPGRMREVGPFAFDVLVHAITAFGLGGLVG GVLMTWWQRRTHRRGSLESTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42601; Mature: 42470
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLLTGSAAARLAGADRSDPRHRRPLVLVAVLGGASAALATLLICLAVGVVGWFLADAG CCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC AHGTPRDGLRVGALGWLLAHGSGIHVDGVAVTVVPLGLTALAAWAVWRLGHRVGDSVSGH CCCCCCCCCCHHHHHHHHHCCCCCEECCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC GPDADRIADGERDWTVPTAAAAFFAGYLLVALVTFRLAATAETAPSLPRVVAGSLLLCAT CCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH FGLVAIAVGSGRAAIWAAFVPASVRAAGAACLRVLGGYLALSALVFLVAFALDFGTAANV HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH MSRLHLSAGDGTVYAALTATLVPNAAVFTGSYLLGPGFAVGVDTLVSPTGVALGPLPMFP HHHHHCCCCCCEEHHHHHHHHCCCCHHEECCHHHCCCHHHHHHHHCCCCCCCCCCCHHHH LLAALPANGPTPAWTAYLLAVPPLVAAAAVARSQRRYPTLRWDHGALRGCVGGALAGLLL HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHH GLLAVVAGGAVGPGRMREVGPFAFDVLVHAITAFGLGGLVGGVLMTWWQRRTHRRGSLES HHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TA CC >Mature Secondary Structure TSLLTGSAAARLAGADRSDPRHRRPLVLVAVLGGASAALATLLICLAVGVVGWFLADAG CCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC AHGTPRDGLRVGALGWLLAHGSGIHVDGVAVTVVPLGLTALAAWAVWRLGHRVGDSVSGH CCCCCCCCCCHHHHHHHHHCCCCCEECCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC GPDADRIADGERDWTVPTAAAAFFAGYLLVALVTFRLAATAETAPSLPRVVAGSLLLCAT CCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH FGLVAIAVGSGRAAIWAAFVPASVRAAGAACLRVLGGYLALSALVFLVAFALDFGTAANV HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH MSRLHLSAGDGTVYAALTATLVPNAAVFTGSYLLGPGFAVGVDTLVSPTGVALGPLPMFP HHHHHCCCCCCEEHHHHHHHHCCCCHHEECCHHHCCCHHHHHHHHCCCCCCCCCCCHHHH LLAALPANGPTPAWTAYLLAVPPLVAAAAVARSQRRYPTLRWDHGALRGCVGGALAGLLL HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHH GLLAVVAGGAVGPGRMREVGPFAFDVLVHAITAFGLGGLVGGVLMTWWQRRTHRRGSLES HHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA