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The map label for this gene is lytB [H]

Identifier: 119717738

GI number: 119717738

Start: 3727351

End: 3728505

Strand: Reverse

Name: lytB [H]

Synonym: Noca_3516

Alternate gene names: 119717738

Gene position: 3728505-3727351 (Counterclockwise)

Preceding gene: 119717739

Following gene: 119717737

Centisome position: 74.78

GC content: 73.42

Gene sequence:

>1155_bases
ATGATCCGACGGCTCGCCGTCCTGCTGACGGCCGCCGCCCTCGCCGCGCCGGTCGCTCCGGCCTACGCCGAGCGGTCTGA
GCGGGCGCCCGTCCAGCGGGAGCCGGCCAGCGTCACCATCTCCACGTGGGGCAACGGCCACGGCAAGGGCCTCTCGCAGT
ACGGCGCCCGCAACCGCGCCGACGCGGGGGAGAGCTACGGCCAGATCCTCGACCACTACTACCCGGGCACGTCGCAGGGA
AGCGCCCGCGGCAGCATCCGGGTGCTGCTGAGCGCCGCACCGGGCGGTCGGATGACCATCCAGGCACGCTCGGGCGTCAA
GGCACGGGCAGGAACCAGGACCTGGACGCTGCCCACCCGTCGCGACGGCAAGTCCGTCAAGCTCTGGCGGGTCCGGCGCG
CGGGCGAGCGGTGGGAGCTGGCCTACCGCACCGGCTCCTGGCACGTGTGGCGCACGACGCGGGTCGCGGCAGCGTTCGCG
TCCCGGCAGCCGATGGCCCTCGTGAAGGCGGCGACGTATCGCGGCGTGCTCCGTCTCACCCCGTCCGGCGTGGTCAACAC
GGTCGGTCTCGAGAACTACGTCCGCGGGGTCGTGGCCCAGGAGATGCCGGCGAGCTGGTCGCCGGCGGCCGTGCAGGCCC
AGGCGGTGGCGGCGCGCACGTACGCCGTCTTCGAGCGTGGCAACGTGGCAGCGGGCCGCGACTACGACCTGTGCGACACC
TCGGCCTGCCAGGTCTACCTCGGCGCGGCGGGGGAGCACCCCGCCTCCGACGCCGCCGTCGCCGCGACCGCAGGCGAGGT
CCGCAGCTACGGCGGCGAGCCGATCTTCGCCCAGTTCTCCGCGAGCAACGGCGGCTACAGCGTCGATGGCGGTTACCCGT
ACCTGGTGGCTGCGCCCGACGACCAGGACCACGGCTATCCCGGCGATCCGGCGAGCCGGACGTTCACCGGCGATGAGATC
ACCCGCCACTGGACCGGGCTCGGTGACCTGGTGTCGGTGGAGGTGCTCGAGCGCGACGGCAACGGCACCGCGCAGGTGCC
GGGGGGCCGGGCGACGCTGCTGCGGGTCACCGGCACCAAGGGCGAGGTGGACGTCAGCGGCTCGGCCTTCCGCTCCTACC
TGGGCCTGCGCACCACGCTGCTGGAAATTACATAA

Upstream 100 bases:

>100_bases
TACGGTGTATCCATCGATGAGCGGCTCGATCGCCGAGGCCGCTCGCCGCCTGCACCGCGCCTAGGCCGACGACCCTCGGC
CGACGACTCTCGGAGGACCC

Downstream 100 bases:

>100_bases
CTGTAGTTCTCTGGTTCACATTGCGGACGGGTGTGACCCGTGATGCGATTGGGGTTCCCATCCGTCACAGTCGTCCCAGA
GGTCACCATGCGCGCCGTGT

Product: SpoIID/LytB domain-containing protein

Products: NA

Alternate protein names: Cell wall-associated polypeptide CWBP76; CWBP76; Modifier protein of major autolysin [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MIRRLAVLLTAAALAAPVAPAYAERSERAPVQREPASVTISTWGNGHGKGLSQYGARNRADAGESYGQILDHYYPGTSQG
SARGSIRVLLSAAPGGRMTIQARSGVKARAGTRTWTLPTRRDGKSVKLWRVRRAGERWELAYRTGSWHVWRTTRVAAAFA
SRQPMALVKAATYRGVLRLTPSGVVNTVGLENYVRGVVAQEMPASWSPAAVQAQAVAARTYAVFERGNVAAGRDYDLCDT
SACQVYLGAAGEHPASDAAVAATAGEVRSYGGEPIFAQFSASNGGYSVDGGYPYLVAAPDDQDHGYPGDPASRTFTGDEI
TRHWTGLGDLVSVEVLERDGNGTAQVPGGRATLLRVTGTKGEVDVSGSAFRSYLGLRTTLLEIT

Sequences:

>Translated_384_residues
MIRRLAVLLTAAALAAPVAPAYAERSERAPVQREPASVTISTWGNGHGKGLSQYGARNRADAGESYGQILDHYYPGTSQG
SARGSIRVLLSAAPGGRMTIQARSGVKARAGTRTWTLPTRRDGKSVKLWRVRRAGERWELAYRTGSWHVWRTTRVAAAFA
SRQPMALVKAATYRGVLRLTPSGVVNTVGLENYVRGVVAQEMPASWSPAAVQAQAVAARTYAVFERGNVAAGRDYDLCDT
SACQVYLGAAGEHPASDAAVAATAGEVRSYGGEPIFAQFSASNGGYSVDGGYPYLVAAPDDQDHGYPGDPASRTFTGDEI
TRHWTGLGDLVSVEVLERDGNGTAQVPGGRATLLRVTGTKGEVDVSGSAFRSYLGLRTTLLEIT
>Mature_384_residues
MIRRLAVLLTAAALAAPVAPAYAERSERAPVQREPASVTISTWGNGHGKGLSQYGARNRADAGESYGQILDHYYPGTSQG
SARGSIRVLLSAAPGGRMTIQARSGVKARAGTRTWTLPTRRDGKSVKLWRVRRAGERWELAYRTGSWHVWRTTRVAAAFA
SRQPMALVKAATYRGVLRLTPSGVVNTVGLENYVRGVVAQEMPASWSPAAVQAQAVAARTYAVFERGNVAAGRDYDLCDT
SACQVYLGAAGEHPASDAAVAATAGEVRSYGGEPIFAQFSASNGGYSVDGGYPYLVAAPDDQDHGYPGDPASRTFTGDEI
TRHWTGLGDLVSVEVLERDGNGTAQVPGGRATLLRVTGTKGEVDVSGSAFRSYLGLRTTLLEIT

Specific function: Possibly involved in cell wall metabolism during spore formation. Enhances the amidase activity approximately threefold [H]

COG id: COG2385

COG function: function code D; Sporulation protein and related proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein. Secreted, cell wall. Note=Cell wall localization shown in PubMed:11987133 [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007253
- InterPro:   IPR013486
- InterPro:   IPR013693 [H]

Pfam domain/function: PF04122 CW_binding_2; PF08486 SpoIID [H]

EC number: NA

Molecular weight: Translated: 40749; Mature: 40749

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRLAVLLTAAALAAPVAPAYAERSERAPVQREPASVTISTWGNGHGKGLSQYGARNRA
CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCC
DAGESYGQILDHYYPGTSQGSARGSIRVLLSAAPGGRMTIQARSGVKARAGTRTWTLPTR
CCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEECCCCEEEECCCC
RDGKSVKLWRVRRAGERWELAYRTGSWHVWRTTRVAAAFASRQPMALVKAATYRGVLRLT
CCCCCEEEEEEECCCCEEEEEEECCCEEEEEHHHHHHHHHCCCCHHHHHHHHHCCEEEEC
PSGVVNTVGLENYVRGVVAQEMPASWSPAAVQAQAVAARTYAVFERGNVAAGRDYDLCDT
CCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCC
SACQVYLGAAGEHPASDAAVAATAGEVRSYGGEPIFAQFSASNGGYSVDGGYPYLVAAPD
CCEEEEEECCCCCCCCCCEEEEEHHHHHHCCCCEEEEEEECCCCCEEECCCCEEEEECCC
DQDHGYPGDPASRTFTGDEITRHWTGLGDLVSVEVLERDGNGTAQVPGGRATLLRVTGTK
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCEECCCCCEEEEEEECCC
GEVDVSGSAFRSYLGLRTTLLEIT
CCEEECHHHHHHHHHHEEEEEEEC
>Mature Secondary Structure
MIRRLAVLLTAAALAAPVAPAYAERSERAPVQREPASVTISTWGNGHGKGLSQYGARNRA
CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCC
DAGESYGQILDHYYPGTSQGSARGSIRVLLSAAPGGRMTIQARSGVKARAGTRTWTLPTR
CCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEECCCCEEEECCCC
RDGKSVKLWRVRRAGERWELAYRTGSWHVWRTTRVAAAFASRQPMALVKAATYRGVLRLT
CCCCCEEEEEEECCCCEEEEEEECCCEEEEEHHHHHHHHHCCCCHHHHHHHHHCCEEEEC
PSGVVNTVGLENYVRGVVAQEMPASWSPAAVQAQAVAARTYAVFERGNVAAGRDYDLCDT
CCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCC
SACQVYLGAAGEHPASDAAVAATAGEVRSYGGEPIFAQFSASNGGYSVDGGYPYLVAAPD
CCEEEEEECCCCCCCCCCEEEEEHHHHHHCCCCEEEEEEECCCCCEEECCCCEEEEECCC
DQDHGYPGDPASRTFTGDEITRHWTGLGDLVSVEVLERDGNGTAQVPGGRATLLRVTGTK
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCEECCCCCEEEEEEECCC
GEVDVSGSAFRSYLGLRTTLLEIT
CCEEECHHHHHHHHHHEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1357079; 1356138; 9384377 [H]