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The map label for this gene is xylB [H]

Identifier: 119717620

GI number: 119717620

Start: 3599881

End: 3601278

Strand: Reverse

Name: xylB [H]

Synonym: Noca_3397

Alternate gene names: 119717620

Gene position: 3601278-3599881 (Counterclockwise)

Preceding gene: 119717622

Following gene: 119717619

Centisome position: 72.23

GC content: 77.04

Gene sequence:

>1398_bases
GTGCCACTCGTCGCGGGGGTCGACACCTCCACCCAGTCCTGCAAGGTCGTCGTCTGCGACGCGGAGAGCGGGGAGCTCGT
CCGCAGCGGCGCGGCCCCCCACCCCGACGGCACCGAGGTGCACCCGGACGCCTGGTGGGTCGCCTTCGAGCGGGCGAGTG
CGGCCGCCGGCGGGCTCGACGAGGTCGAGGCGATCGCCGTCGGCGGGCAGCAGCACGGCATGGTCTGCCTCGACGAGCAG
GGCGCGGTGGTGCGCCCGGCACTGCTCTGGAACGACACCCGCTCCGCGCAGGCGGCGCTGGACCTGATCGAGGAGCTCGG
CGGACCCGGCGCCTGGGTCGACGCCGTCGGCCTGGTGCCGGTCGCGTCGTTCACCGTCACCAAGCTGCGCTGGCTGGCCC
GCCACGAGCCGGACAACGCCGCCCGCACGGCGGCCGTCTGCCTGCCGCACGACTGGCTGACCTGGAAGCTGGCCGGCGCG
CCCTCGCTGGACGCGCTGGTGACGGACCGTGGCGATGCCAGCGGCACCGGCTACTGGTCGCCGTCGACGGGGCAGTACCG
CCGCGATCTCCTCGAGCTCGGCCTGGGCCGCGACGTGGTCCTCCCGCGGGTGCTCGGCCCGGCCGAGGTCGCCGGCCGGA
CGCCGGCCGGCCAGCTGCTCGGCCCCGGCACCGGCGACAACGCGGCGAGCGCGCTCGGCCTGGGAGCCGTCGCGGGCGAC
GTCATCGTCTCGATCGGCACCTCCGGGGTGGCCTGCGCGGTCGCGGAGCAGCCCGTCGGCGACGTCTCCGGCGCCGTCGC
CGGGTTCGCCGACGCCACCGGCCGGTTCCTGCCGCTGGTCGCGACCATGAACGCCGCGCGGGTGCTCGCGGCCGCCGAGC
GGATCCTCCGCGTGGACCACAGCGAGTTCTCCGAGCTCGCGCTCTCCGCACCGGCCGGTGCCGGCGGCATGGTGCTGGTG
CCCTACCTCGAGGGCGAGCGCACCCCGAACCGCCCCGACGCCACCGGGGCCCTGCACGGCATGCGGCTGGAGACCACCGA
CCCGGCGCATCTTGCCCGCGCCGCGGTCGAGGGCATGCTCTGCGGCCTGGCCGACGCGGTGGACGCCGTCCGGGCGCTCG
GCACCCCGGTCGAACGGATCATCCTGGTCGGCGGGGCCGCCCGCTCGCGCGCCGTGCGCGAGATCGCCTCGGCCGTGCTC
GGGCTCCCGGTGACCGTCCCGCAGCCGGGGGAGTACGTCGCCCGCGGTGCCGCCCGCCAAGCCGCCTGGGTGCTCTCGGG
GGCCGCCGAGCCACCCGCGTGGCCGCTCGCTGACGTGGTCGCCACCGAGGTCGAGCCGACCCCACAGGTGCGGGCCCGGT
ATGCCGAGGTCCGCGACCTGACAGCGACCCGGCCGTGA

Upstream 100 bases:

>100_bases
ATGGGAGAGGACCAGGTTCTGGCCGGCCGGATCACGCACGTGCCAACCCTATGGGCACGTTCCCACTCAGAGCACCGAGC
CTCGGACTAACCTCGGCGTC

Downstream 100 bases:

>100_bases
CCGAGCCCCCCGAGCGGCTCGACGCCGCGGACCCGCTCGCGTCGTACCGCGCCCGCTTCGTCGGCGCCGCCGAGCCGCTC
GTCTACTTCGACGGCAACTC

Product: xylulokinase

Products: NA

Alternate protein names: Xylulokinase [H]

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MPLVAGVDTSTQSCKVVVCDAESGELVRSGAAPHPDGTEVHPDAWWVAFERASAAAGGLDEVEAIAVGGQQHGMVCLDEQ
GAVVRPALLWNDTRSAQAALDLIEELGGPGAWVDAVGLVPVASFTVTKLRWLARHEPDNAARTAAVCLPHDWLTWKLAGA
PSLDALVTDRGDASGTGYWSPSTGQYRRDLLELGLGRDVVLPRVLGPAEVAGRTPAGQLLGPGTGDNAASALGLGAVAGD
VIVSIGTSGVACAVAEQPVGDVSGAVAGFADATGRFLPLVATMNAARVLAAAERILRVDHSEFSELALSAPAGAGGMVLV
PYLEGERTPNRPDATGALHGMRLETTDPAHLARAAVEGMLCGLADAVDAVRALGTPVERIILVGGAARSRAVREIASAVL
GLPVTVPQPGEYVARGAARQAAWVLSGAAEPPAWPLADVVATEVEPTPQVRARYAEVRDLTATRP

Sequences:

>Translated_465_residues
MPLVAGVDTSTQSCKVVVCDAESGELVRSGAAPHPDGTEVHPDAWWVAFERASAAAGGLDEVEAIAVGGQQHGMVCLDEQ
GAVVRPALLWNDTRSAQAALDLIEELGGPGAWVDAVGLVPVASFTVTKLRWLARHEPDNAARTAAVCLPHDWLTWKLAGA
PSLDALVTDRGDASGTGYWSPSTGQYRRDLLELGLGRDVVLPRVLGPAEVAGRTPAGQLLGPGTGDNAASALGLGAVAGD
VIVSIGTSGVACAVAEQPVGDVSGAVAGFADATGRFLPLVATMNAARVLAAAERILRVDHSEFSELALSAPAGAGGMVLV
PYLEGERTPNRPDATGALHGMRLETTDPAHLARAAVEGMLCGLADAVDAVRALGTPVERIILVGGAARSRAVREIASAVL
GLPVTVPQPGEYVARGAARQAAWVLSGAAEPPAWPLADVVATEVEPTPQVRARYAEVRDLTATRP
>Mature_464_residues
PLVAGVDTSTQSCKVVVCDAESGELVRSGAAPHPDGTEVHPDAWWVAFERASAAAGGLDEVEAIAVGGQQHGMVCLDEQG
AVVRPALLWNDTRSAQAALDLIEELGGPGAWVDAVGLVPVASFTVTKLRWLARHEPDNAARTAAVCLPHDWLTWKLAGAP
SLDALVTDRGDASGTGYWSPSTGQYRRDLLELGLGRDVVLPRVLGPAEVAGRTPAGQLLGPGTGDNAASALGLGAVAGDV
IVSIGTSGVACAVAEQPVGDVSGAVAGFADATGRFLPLVATMNAARVLAAAERILRVDHSEFSELALSAPAGAGGMVLVP
YLEGERTPNRPDATGALHGMRLETTDPAHLARAAVEGMLCGLADAVDAVRALGTPVERIILVGGAARSRAVREIASAVLG
LPVTVPQPGEYVARGAARQAAWVLSGAAEPPAWPLADVVATEVEPTPQVRARYAEVRDLTATRP

Specific function: Unknown

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Homo sapiens, GI189409120, Length=498, Percent_Identity=25.1004016064257, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI4504007, Length=498, Percent_Identity=25.1004016064257, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI42794763, Length=504, Percent_Identity=24.4047619047619, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI41393575, Length=497, Percent_Identity=24.1448692152917, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1789987, Length=432, Percent_Identity=32.1759259259259, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1790005, Length=380, Percent_Identity=25.2631578947368, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1790361, Length=501, Percent_Identity=23.9520958083832, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17535599, Length=450, Percent_Identity=25.1111111111111, Blast_Score=88, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17554530, Length=471, Percent_Identity=22.5053078556263, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17864214, Length=462, Percent_Identity=22.9437229437229, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24654573, Length=399, Percent_Identity=24.3107769423559, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24655555, Length=385, Percent_Identity=22.8571428571429, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24655560, Length=385, Percent_Identity=22.8571428571429, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24655570, Length=385, Percent_Identity=22.8571428571429, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24655574, Length=385, Percent_Identity=22.8571428571429, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24655565, Length=385, Percent_Identity=22.8571428571429, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.17 [H]

Molecular weight: Translated: 47672; Mature: 47541

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00933 FGGY_KINASES_1 ; PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLVAGVDTSTQSCKVVVCDAESGELVRSGAAPHPDGTEVHPDAWWVAFERASAAAGGLD
CCEEECCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCHH
EVEAIAVGGQQHGMVCLDEQGAVVRPALLWNDTRSAQAALDLIEELGGPGAWVDAVGLVP
HHHEEEECCCCCCEEEECCCCCEEECCEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
VASFTVTKLRWLARHEPDNAARTAAVCLPHDWLTWKLAGAPSLDALVTDRGDASGTGYWS
HHHHHHHHHHHHHHCCCCCHHCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCC
PSTGQYRRDLLELGLGRDVVLPRVLGPAEVAGRTPAGQLLGPGTGDNAASALGLGAVAGD
CCCCHHHHHHHHHCCCCCEEHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
VIVSIGTSGVACAVAEQPVGDVSGAVAGFADATGRFLPLVATMNAARVLAAAERILRVDH
EEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCH
SEFSELALSAPAGAGGMVLVPYLEGERTPNRPDATGALHGMRLETTDPAHLARAAVEGML
HHHHHHHEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHH
CGLADAVDAVRALGTPVERIILVGGAARSRAVREIASAVLGLPVTVPQPGEYVARGAARQ
HHHHHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHH
AAWVLSGAAEPPAWPLADVVATEVEPTPQVRARYAEVRDLTATRP
HHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PLVAGVDTSTQSCKVVVCDAESGELVRSGAAPHPDGTEVHPDAWWVAFERASAAAGGLD
CEEECCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCHH
EVEAIAVGGQQHGMVCLDEQGAVVRPALLWNDTRSAQAALDLIEELGGPGAWVDAVGLVP
HHHEEEECCCCCCEEEECCCCCEEECCEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
VASFTVTKLRWLARHEPDNAARTAAVCLPHDWLTWKLAGAPSLDALVTDRGDASGTGYWS
HHHHHHHHHHHHHHCCCCCHHCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCC
PSTGQYRRDLLELGLGRDVVLPRVLGPAEVAGRTPAGQLLGPGTGDNAASALGLGAVAGD
CCCCHHHHHHHHHCCCCCEEHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
VIVSIGTSGVACAVAEQPVGDVSGAVAGFADATGRFLPLVATMNAARVLAAAERILRVDH
EEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCH
SEFSELALSAPAGAGGMVLVPYLEGERTPNRPDATGALHGMRLETTDPAHLARAAVEGML
HHHHHHHEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHH
CGLADAVDAVRALGTPVERIILVGGAARSRAVREIASAVLGLPVTVPQPGEYVARGAARQ
HHHHHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHH
AAWVLSGAAEPPAWPLADVVATEVEPTPQVRARYAEVRDLTATRP
HHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]