| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is yceH [C]
Identifier: 119717006
GI number: 119717006
Start: 2951987
End: 2953189
Strand: Reverse
Name: yceH [C]
Synonym: Noca_2782
Alternate gene names: 119717006
Gene position: 2953189-2951987 (Counterclockwise)
Preceding gene: 119717007
Following gene: 119717003
Centisome position: 59.23
GC content: 75.23
Gene sequence:
>1203_bases GTGACCGACCTCCCCGCGCTCGACGCCGAGGAACAGCGCGTCCTCGGCAGCCTGCTGGAGAAGCAGCGCACGGTGCCGGA CTCCTACCCGTTGACGCTGAACTCGCTGCGCACCGCGTGCAACCAGTCGAGCAGCCGCGAGCCGGTCGTCGACTACGACG AGCACACCGTCGAGCAGGTCGGCCGCCGGCTCAAGGACCGCGGTCTGCTGCGCATCGTGTGGTCCGACACCGGGCGCCGC ACCCTGAAGTACCACCAGGTCCTCGACGAGGTGCTCGACCTGGCCGAGGACGAGCGGGCGCTCGTGACGGTGCTGCTGCT GCGCGGGCCGCAGGCACCCGGCGAGCTCAAGACCCGCACCGAGCGGCTGCACGGGTTCGCCGACCGGGGCGCGGTCGAGC AGACACTCTCCCGGATGGCCGAGCGGGGACTGGTGCGCGAGCTCCCGCGCCGCGGTGGCGACCGGGACAGCCGCTGGGCG CACCTGCTCGGCGAGGAGGCCGCTGTCGAGGAGGCGCCGGCGCCGATCGTGGACGTCCTGGCCGCCGGCGGGGGCGCGCG GGACGAGCGGGTGCGCTCGTCGTACGACGCGGTCGCCACGGCGTACGCCGACCACCTGCTCGACGAGCTCGCCGGCCTGC CGTTCGAGACCTGGCTGCTCGACCGGGTCGCCGCGCACGCCGCCGACGATCGGGCCGGCGGCCCGGTGGTGGACGCCGGC TGCGGTCCCGGTCACGTCACGGCGTACCTCGCCGACGCCGGCGTCGACGCACACGGCATCGACCTCTCGCCGGCCATGGT CGCCGAGGCGCGGCGCCGGTTCCCGGACGGCTCCTACGAGGTCGGCGACCTGCGCCGGCTGATGCGGCCGACGACCGCGG AGGGCTGGGCCGCGGTGCTGGGCTGGTACTCGCTGGGCCACCTGGCCTCCGCCGAGCTCCCCGACGCCGTCGCCGCGCTC GCGCGGCCGCTCGCACCGGGTGGCTGGCTGGTGCTCGCCGGGCACGCCGGTGTCGGCGTACGCCACCTCGACGCGTGGTT CGAGCACGAGGTCGACCTCGACTTCGTCGCGCGCGAGCCCGAGGAGATCGTCGCCGCCGTCACCGCCGCCGGCCTGGTCG ACGTGGAGTGGTTCCTCCGCGGCCCGTTGGCCGACCGTGGTGAGACGACCGAGCGCCTCTACCTCCTGGCCCGCCGAGGT TGA
Upstream 100 bases:
>100_bases CACGAGGACGTCGTACTGACCCTCACCGAGCTGCGGCGCTGGGATCCGGACGCCGGCCGGGTGACGACGATCGCCCAGGC GCGTCAGTAGGGTCGCTCTC
Downstream 100 bases:
>100_bases CTCAACGCGGGGTGAGGACCACGTCGTCGAGGACGGGGGCACCGTCGCGGTCACCGCCGGCGACCGTCGCGGAGCCGACG ATCCGGCCGTCCTCGCGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MTDLPALDAEEQRVLGSLLEKQRTVPDSYPLTLNSLRTACNQSSSREPVVDYDEHTVEQVGRRLKDRGLLRIVWSDTGRR TLKYHQVLDEVLDLAEDERALVTVLLLRGPQAPGELKTRTERLHGFADRGAVEQTLSRMAERGLVRELPRRGGDRDSRWA HLLGEEAAVEEAPAPIVDVLAAGGGARDERVRSSYDAVATAYADHLLDELAGLPFETWLLDRVAAHAADDRAGGPVVDAG CGPGHVTAYLADAGVDAHGIDLSPAMVAEARRRFPDGSYEVGDLRRLMRPTTAEGWAAVLGWYSLGHLASAELPDAVAAL ARPLAPGGWLVLAGHAGVGVRHLDAWFEHEVDLDFVAREPEEIVAAVTAAGLVDVEWFLRGPLADRGETTERLYLLARRG
Sequences:
>Translated_400_residues MTDLPALDAEEQRVLGSLLEKQRTVPDSYPLTLNSLRTACNQSSSREPVVDYDEHTVEQVGRRLKDRGLLRIVWSDTGRR TLKYHQVLDEVLDLAEDERALVTVLLLRGPQAPGELKTRTERLHGFADRGAVEQTLSRMAERGLVRELPRRGGDRDSRWA HLLGEEAAVEEAPAPIVDVLAAGGGARDERVRSSYDAVATAYADHLLDELAGLPFETWLLDRVAAHAADDRAGGPVVDAG CGPGHVTAYLADAGVDAHGIDLSPAMVAEARRRFPDGSYEVGDLRRLMRPTTAEGWAAVLGWYSLGHLASAELPDAVAAL ARPLAPGGWLVLAGHAGVGVRHLDAWFEHEVDLDFVAREPEEIVAAVTAAGLVDVEWFLRGPLADRGETTERLYLLARRG >Mature_399_residues TDLPALDAEEQRVLGSLLEKQRTVPDSYPLTLNSLRTACNQSSSREPVVDYDEHTVEQVGRRLKDRGLLRIVWSDTGRRT LKYHQVLDEVLDLAEDERALVTVLLLRGPQAPGELKTRTERLHGFADRGAVEQTLSRMAERGLVRELPRRGGDRDSRWAH LLGEEAAVEEAPAPIVDVLAAGGGARDERVRSSYDAVATAYADHLLDELAGLPFETWLLDRVAAHAADDRAGGPVVDAGC GPGHVTAYLADAGVDAHGIDLSPAMVAEARRRFPDGSYEVGDLRRLMRPTTAEGWAAVLGWYSLGHLASAELPDAVAALA RPLAPGGWLVLAGHAGVGVRHLDAWFEHEVDLDFVAREPEEIVAAVTAAGLVDVEWFLRGPLADRGETTERLYLLARRG
Specific function: Unknown
COG id: COG3132
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0502 family [H]
Homologues:
Organism=Escherichia coli, GI1787306, Length=192, Percent_Identity=43.2291666666667, Blast_Score=128, Evalue=6e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007432 - InterPro: IPR011991 [H]
Pfam domain/function: PF04337 DUF480 [H]
EC number: NA
Molecular weight: Translated: 43545; Mature: 43414
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLPALDAEEQRVLGSLLEKQRTVPDSYPLTLNSLRTACNQSSSREPVVDYDEHTVEQV CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCHHHHHHH GRRLKDRGLLRIVWSDTGRRTLKYHQVLDEVLDLAEDERALVTVLLLRGPQAPGELKTRT HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH ERLHGFADRGAVEQTLSRMAERGLVRELPRRGGDRDSRWAHLLGEEAAVEEAPAPIVDVL HHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCHHHHHH AAGGGARDERVRSSYDAVATAYADHLLDELAGLPFETWLLDRVAAHAADDRAGGPVVDAG HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEECC CGPGHVTAYLADAGVDAHGIDLSPAMVAEARRRFPDGSYEVGDLRRLMRPTTAEGWAAVL CCCCHHEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH GWYSLGHLASAELPDAVAALARPLAPGGWLVLAGHAGVGVRHLDAWFEHEVDLDFVAREP HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHCCH EEIVAAVTAAGLVDVEWFLRGPLADRGETTERLYLLARRG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCC >Mature Secondary Structure TDLPALDAEEQRVLGSLLEKQRTVPDSYPLTLNSLRTACNQSSSREPVVDYDEHTVEQV CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCHHHHHHH GRRLKDRGLLRIVWSDTGRRTLKYHQVLDEVLDLAEDERALVTVLLLRGPQAPGELKTRT HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHH ERLHGFADRGAVEQTLSRMAERGLVRELPRRGGDRDSRWAHLLGEEAAVEEAPAPIVDVL HHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCHHHHHH AAGGGARDERVRSSYDAVATAYADHLLDELAGLPFETWLLDRVAAHAADDRAGGPVVDAG HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEECC CGPGHVTAYLADAGVDAHGIDLSPAMVAEARRRFPDGSYEVGDLRRLMRPTTAEGWAAVL CCCCHHEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH GWYSLGHLASAELPDAVAALARPLAPGGWLVLAGHAGVGVRHLDAWFEHEVDLDFVAREP HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHCCH EEIVAAVTAAGLVDVEWFLRGPLADRGETTERLYLLARRG HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA