| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is ydfJ [H]
Identifier: 119716402
GI number: 119716402
Start: 2324513
End: 2326867
Strand: Reverse
Name: ydfJ [H]
Synonym: Noca_2172
Alternate gene names: 119716402
Gene position: 2326867-2324513 (Counterclockwise)
Preceding gene: 119716403
Following gene: 119716400
Centisome position: 46.67
GC content: 67.01
Gene sequence:
>2355_bases ATGTCAACCTTCCTGTACCGGCTCGGAAGAACCGCGTTCGGCAAACCGTGGCTGTTCGTCGCCGGCTGGGTCGCAGTCCT CGCGGTGGTCGTTGGTGGCATGGCAATCAACGGGGTAAGCGTCAGCTCCGAGATGAAGATCGAGGGCACCGAGGCCCAGA CCGTGCTCGACCGCGTGGCCGATGAGCTCCCCGAGGCCTCGGGAGGCCAGGCCAGCGTGGTCTTCACCGTGCCGGACGGC GAGCGCCTCGACACTCCGGAGCGACTCGCGGTCATCAGCGGCACCGTCAGCGACGTCTATGACCTCGAGAAGGTCGTCAA CCCCCTCGACGCCGCGCTGGGTGCCGCCGAGCAGGGAGGACCGGGCACCCCCCAGGAGAATGCACCGGGCGATCCCCCAG CCGGGTCGGACCAAGAACCGGCACAGGAGCAGGGGCCTCCGTACCAGCCGCTGCTGGTGGACGGGGAACCGGTGCCCGGC GTGCTGGTGTCCTCGGACGGGCAGGTCGCGCTGTTCCAGTTTCAATTCACGGTCGCCGCAACCTCACTGACAGATGACGA CGTCACCTCGGTGGTCGAGGTGGTGGAACGCGCCGAGCAGGGAACGGGGATGACCGTTCTACCGAGCGACTCGCTCAAGG CCCTCGAGATCCCCATCGGCATCGGCGAGGTGATCGGTCTCGCCGTCGCCGCCCTCGTGCTGGTGCTCACCCTGGGTTCC CTTGTCGCCGCCGGCCTGCCCCTGATCACCGCACTGGTCGGCGTCGGCATCGGCGTGGGCGGCGCATACGCGCTCTCGAA CGTCGTCGAGATGAACTCCGCCACTCCCGTCCTCGGCCTCATGGTCGGGCTCGCCGTCGGCATCGACTACGCACTGTTCG TCGTCAACCGGCAGCGACGACTGATCCTCGACCAGGGACTCACCGCTCAGGAGGCAGCCGGCAGAGCAGTCGGCACCGCG GGCAGTGCCGTGTTCTTCGCCGGCCTGACCGTCCTCATCGCGCTCACCGCGCTCACCGTCATCGGCATCGCAGTGCTGTC CACGATGGCACTGGTCGCCGCGTCCACGGTGGCCCTGGCCGTCCTCATCGCCCTGAGCCTTCTGCCGGCGCTGCTCGGTC TGGTCGGGGAGCGGATCTGCTCCGACAAAGCCCGAGCCCGACGCCGCACCAAGGTCGAGGCCGAGTCGCACGGCGTCGCT GACCATTGGGTCAAGGGTGTGATCAGGTTCAGGTGGCCTGTCATCGCCGGTGTGGTCGCGATCCTGGGCGTGATGGCGAT CCCCGCAGCCAGCATGCACCTGGGGATCCCTTCCGGCGCGACCGCCAACCAGGACACAGCCGCCCGCCAGAGCTACGAGG CAGTGTCCCAAGGCTTCGGCGAGGGATTCAACGGCCCCCTCCTGGTCACCGCCGAGCCCGTCGGCACCTCAGGCCGCGTC ACGCCCGAGCTGACCGCGAAACTAATCGGCGAGTTCCAGGACCGAGGCGACATTGTGCTGGCCGCCCCCGTTGGCGTCAA CGAGGCTGGCGACCTGGCTGTGTTCAGCATCATCCCCGCCTCCGGACCCGATGACGAGGCCACCAGCGACCTCGTCAAAT CGCTACGCGAGCCCGGCAACGCCATCGCCCAGCGCAACCAGGTGCAGTTGGGCGTGACCGGGTTCACCGCCATCCGCATC GACATGTCCGACAAGATCGCCGGCGTTCTTCCCCTCTATCTCGGCATCATCATCATCCTTTCCATCCTGATCCTGATGCT GGTCTTCCGCTCGGTCGTGGTCCCAATCAAGGCCACAGCGGGCTTCCTGCTCAGCATCCTGGCCACCTTCGGTGCCACCA CTGCCGTCTTCCAGTGGGGCTGGCTCAGCGGCCTCTTCGGGTTCGACACCGGCGGCCCGCTGATGAGCTTCATGCCGATC ATCGTGACCGGCATCCTCTACGGACTCGCCATGGATTACGAGGTCTTCCTGGTCTCCTCGATGCGCGAGGCGCACATCCA CGGCCAAGCAGCCCGCCAGAGCGTCGTCCACGGGTTCGACCAGGCCAGCCGGGTCGTGGTCGCAGCCGCCATCATCATGG TCGCAGTGTTCTCCGGCTTCATCTTCAGCCACGACATCATGATCAAGCAGATCGGCTTCGCCCTCGCCGCCGGCATCCTC ATCGACGCCTTCCTCGTCCGGCTGACCCTCGTCCCGGCGCTCATGGCCGCCTTCGACGAGCGAGCATGGTGGCTGCCCCG CTGGCTCGACCACCTACTGCCGGACCTCGACATCGAGGGCGACAAGCTCTTGGCCATGCTCAACCAGCAGGCCGAACCCA CCGACCGAGAAGACAACGACATCCGCAGCCGATGA
Upstream 100 bases:
>100_bases CCGTGTCGATGGACTACGACTCGTTCCTCGACCTCACCTTCGACTACCTACGCCACGGCCTCTAGCCAGCGACTCCACGC CCTCTAGGAGAACCAGACCG
Downstream 100 bases:
>100_bases GAAGGCTGACGCACCCAGAGCCGATCGCTCCTGACACACTTTGGAGCCATCACCAGACCGACCCGGGCACGGTCAAGCGC GGTAGACCATCAACGTCCTG
Product: MMPL domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 784; Mature: 783
Protein sequence:
>784_residues MSTFLYRLGRTAFGKPWLFVAGWVAVLAVVVGGMAINGVSVSSEMKIEGTEAQTVLDRVADELPEASGGQASVVFTVPDG ERLDTPERLAVISGTVSDVYDLEKVVNPLDAALGAAEQGGPGTPQENAPGDPPAGSDQEPAQEQGPPYQPLLVDGEPVPG VLVSSDGQVALFQFQFTVAATSLTDDDVTSVVEVVERAEQGTGMTVLPSDSLKALEIPIGIGEVIGLAVAALVLVLTLGS LVAAGLPLITALVGVGIGVGGAYALSNVVEMNSATPVLGLMVGLAVGIDYALFVVNRQRRLILDQGLTAQEAAGRAVGTA GSAVFFAGLTVLIALTALTVIGIAVLSTMALVAASTVALAVLIALSLLPALLGLVGERICSDKARARRRTKVEAESHGVA DHWVKGVIRFRWPVIAGVVAILGVMAIPAASMHLGIPSGATANQDTAARQSYEAVSQGFGEGFNGPLLVTAEPVGTSGRV TPELTAKLIGEFQDRGDIVLAAPVGVNEAGDLAVFSIIPASGPDDEATSDLVKSLREPGNAIAQRNQVQLGVTGFTAIRI DMSDKIAGVLPLYLGIIIILSILILMLVFRSVVVPIKATAGFLLSILATFGATTAVFQWGWLSGLFGFDTGGPLMSFMPI IVTGILYGLAMDYEVFLVSSMREAHIHGQAARQSVVHGFDQASRVVVAAAIIMVAVFSGFIFSHDIMIKQIGFALAAGIL IDAFLVRLTLVPALMAAFDERAWWLPRWLDHLLPDLDIEGDKLLAMLNQQAEPTDREDNDIRSR
Sequences:
>Translated_784_residues MSTFLYRLGRTAFGKPWLFVAGWVAVLAVVVGGMAINGVSVSSEMKIEGTEAQTVLDRVADELPEASGGQASVVFTVPDG ERLDTPERLAVISGTVSDVYDLEKVVNPLDAALGAAEQGGPGTPQENAPGDPPAGSDQEPAQEQGPPYQPLLVDGEPVPG VLVSSDGQVALFQFQFTVAATSLTDDDVTSVVEVVERAEQGTGMTVLPSDSLKALEIPIGIGEVIGLAVAALVLVLTLGS LVAAGLPLITALVGVGIGVGGAYALSNVVEMNSATPVLGLMVGLAVGIDYALFVVNRQRRLILDQGLTAQEAAGRAVGTA GSAVFFAGLTVLIALTALTVIGIAVLSTMALVAASTVALAVLIALSLLPALLGLVGERICSDKARARRRTKVEAESHGVA DHWVKGVIRFRWPVIAGVVAILGVMAIPAASMHLGIPSGATANQDTAARQSYEAVSQGFGEGFNGPLLVTAEPVGTSGRV TPELTAKLIGEFQDRGDIVLAAPVGVNEAGDLAVFSIIPASGPDDEATSDLVKSLREPGNAIAQRNQVQLGVTGFTAIRI DMSDKIAGVLPLYLGIIIILSILILMLVFRSVVVPIKATAGFLLSILATFGATTAVFQWGWLSGLFGFDTGGPLMSFMPI IVTGILYGLAMDYEVFLVSSMREAHIHGQAARQSVVHGFDQASRVVVAAAIIMVAVFSGFIFSHDIMIKQIGFALAAGIL IDAFLVRLTLVPALMAAFDERAWWLPRWLDHLLPDLDIEGDKLLAMLNQQAEPTDREDNDIRSR >Mature_783_residues STFLYRLGRTAFGKPWLFVAGWVAVLAVVVGGMAINGVSVSSEMKIEGTEAQTVLDRVADELPEASGGQASVVFTVPDGE RLDTPERLAVISGTVSDVYDLEKVVNPLDAALGAAEQGGPGTPQENAPGDPPAGSDQEPAQEQGPPYQPLLVDGEPVPGV LVSSDGQVALFQFQFTVAATSLTDDDVTSVVEVVERAEQGTGMTVLPSDSLKALEIPIGIGEVIGLAVAALVLVLTLGSL VAAGLPLITALVGVGIGVGGAYALSNVVEMNSATPVLGLMVGLAVGIDYALFVVNRQRRLILDQGLTAQEAAGRAVGTAG SAVFFAGLTVLIALTALTVIGIAVLSTMALVAASTVALAVLIALSLLPALLGLVGERICSDKARARRRTKVEAESHGVAD HWVKGVIRFRWPVIAGVVAILGVMAIPAASMHLGIPSGATANQDTAARQSYEAVSQGFGEGFNGPLLVTAEPVGTSGRVT PELTAKLIGEFQDRGDIVLAAPVGVNEAGDLAVFSIIPASGPDDEATSDLVKSLREPGNAIAQRNQVQLGVTGFTAIRID MSDKIAGVLPLYLGIIIILSILILMLVFRSVVVPIKATAGFLLSILATFGATTAVFQWGWLSGLFGFDTGGPLMSFMPII VTGILYGLAMDYEVFLVSSMREAHIHGQAARQSVVHGFDQASRVVVAAAIIMVAVFSGFIFSHDIMIKQIGFALAAGILI DAFLVRLTLVPALMAAFDERAWWLPRWLDHLLPDLDIEGDKLLAMLNQQAEPTDREDNDIRSR
Specific function: Unknown
COG id: COG2409
COG function: function code R; Predicted drug exporters of the RND superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mmpL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004869 - InterPro: IPR000731 [H]
Pfam domain/function: PF03176 MMPL [H]
EC number: NA
Molecular weight: Translated: 81793; Mature: 81662
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFLYRLGRTAFGKPWLFVAGWVAVLAVVVGGMAINGVSVSSEMKIEGTEAQTVLDRVA CCHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCHHCCCEEECCCEEECCCHHHHHHHHHH DELPEASGGQASVVFTVPDGERLDTPERLAVISGTVSDVYDLEKVVNPLDAALGAAEQGG HHCCCCCCCCEEEEEECCCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHCCCCCCC PGTPQENAPGDPPAGSDQEPAQEQGPPYQPLLVDGEPVPGVLVSSDGQVALFQFQFTVAA CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCEEECCCCCEEEEEEEEEEEE TSLTDDDVTSVVEVVERAEQGTGMTVLPSDSLKALEIPIGIGEVIGLAVAALVLVLTLGS CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH LVAAGLPLITALVGVGIGVGGAYALSNVVEMNSATPVLGLMVGLAVGIDYALFVVNRQRR HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCCHH LILDQGLTAQEAAGRAVGTAGSAVFFAGLTVLIALTALTVIGIAVLSTMALVAASTVALA HHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLIALSLLPALLGLVGERICSDKARARRRTKVEAESHGVADHWVKGVIRFRWPVIAGVVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH ILGVMAIPAASMHLGIPSGATANQDTAARQSYEAVSQGFGEGFNGPLLVTAEPVGTSGRV HHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC TPELTAKLIGEFQDRGDIVLAAPVGVNEAGDLAVFSIIPASGPDDEATSDLVKSLREPGN CHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCH AIAQRNQVQLGVTGFTAIRIDMSDKIAGVLPLYLGIIIILSILILMLVFRSVVVPIKATA HHHCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLLSILATFGATTAVFQWGWLSGLFGFDTGGPLMSFMPIIVTGILYGLAMDYEVFLVSS HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH MREAHIHGQAARQSVVHGFDQASRVVVAAAIIMVAVFSGFIFSHDIMIKQIGFALAAGIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDAFLVRLTLVPALMAAFDERAWWLPRWLDHLLPDLDIEGDKLLAMLNQQAEPTDREDND HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC IRSR CCCC >Mature Secondary Structure STFLYRLGRTAFGKPWLFVAGWVAVLAVVVGGMAINGVSVSSEMKIEGTEAQTVLDRVA CHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCHHCCCEEECCCEEECCCHHHHHHHHHH DELPEASGGQASVVFTVPDGERLDTPERLAVISGTVSDVYDLEKVVNPLDAALGAAEQGG HHCCCCCCCCEEEEEECCCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHCCCCCCC PGTPQENAPGDPPAGSDQEPAQEQGPPYQPLLVDGEPVPGVLVSSDGQVALFQFQFTVAA CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCEEECCCCCEEEEEEEEEEEE TSLTDDDVTSVVEVVERAEQGTGMTVLPSDSLKALEIPIGIGEVIGLAVAALVLVLTLGS CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH LVAAGLPLITALVGVGIGVGGAYALSNVVEMNSATPVLGLMVGLAVGIDYALFVVNRQRR HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCCHH LILDQGLTAQEAAGRAVGTAGSAVFFAGLTVLIALTALTVIGIAVLSTMALVAASTVALA HHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLIALSLLPALLGLVGERICSDKARARRRTKVEAESHGVADHWVKGVIRFRWPVIAGVVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH ILGVMAIPAASMHLGIPSGATANQDTAARQSYEAVSQGFGEGFNGPLLVTAEPVGTSGRV HHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC TPELTAKLIGEFQDRGDIVLAAPVGVNEAGDLAVFSIIPASGPDDEATSDLVKSLREPGN CHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCH AIAQRNQVQLGVTGFTAIRIDMSDKIAGVLPLYLGIIIILSILILMLVFRSVVVPIKATA HHHCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLLSILATFGATTAVFQWGWLSGLFGFDTGGPLMSFMPIIVTGILYGLAMDYEVFLVSS HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH MREAHIHGQAARQSVVHGFDQASRVVVAAAIIMVAVFSGFIFSHDIMIKQIGFALAAGIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDAFLVRLTLVPALMAAFDERAWWLPRWLDHLLPDLDIEGDKLLAMLNQQAEPTDREDND HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC IRSR CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]