Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 119716078

GI number: 119716078

Start: 1970515

End: 1970862

Strand: Direct

Name: yjgF [C]

Synonym: Noca_1845

Alternate gene names: 119716078

Gene position: 1970515-1970862 (Clockwise)

Preceding gene: 119716077

Following gene: 119716079

Centisome position: 39.52

GC content: 68.68

Gene sequence:

>348_bases
ATGTCCCTTCCACTCCGTCCCGCCGTTGCCGCCGGCGACTTCGTCGCCATCTCGGGCCAGGTCGGCGTCGCCGATGGTGC
CCTCGTCGAGGGCGGGATCAGCGCCGAGGCCAGGCAAGGCCTGGCCAACCTGGTCGCCGTGCTCGAGGCGAACGGGCTGA
CCACCGCAGACGTGGTGAAGACCAATGTGTTCCTGACCTCGATGGACGACTTCGCCGCGATGAACGAGGAGTACGCCAAG
GTCTTCACCGAGGACTTCCCGGCGCGGTCCGCGGTCGCGGTGCACCAGCTCCCGATCGGCGCGGTCTTCGAGATCGAGGC
GTGGGCCTACCGCGGGAACCAGCGGTGA

Upstream 100 bases:

>100_bases
CCGTCGGCGACGTGCTCAACCCCCATCGCATCGAGGGCGCGGTCCACGCTGCCTTCGAGCTCGCAGCCAGCTTCTGATCC
ACCACCTGAGGAGAGAACCG

Downstream 100 bases:

>100_bases
CCAAGCCGGGCTCGGTCGTCGTCACCGGCGGCTCGCGTGGGATCGGCAGGGCCTTCGTCGTCGAGGCCGCGCGACGCGGG
TACGACGTGTTCTTCACCCA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSLPLRPAVAAGDFVAISGQVGVADGALVEGGISAEARQGLANLVAVLEANGLTTADVVKTNVFLTSMDDFAAMNEEYAK
VFTEDFPARSAVAVHQLPIGAVFEIEAWAYRGNQR

Sequences:

>Translated_115_residues
MSLPLRPAVAAGDFVAISGQVGVADGALVEGGISAEARQGLANLVAVLEANGLTTADVVKTNVFLTSMDDFAAMNEEYAK
VFTEDFPARSAVAVHQLPIGAVFEIEAWAYRGNQR
>Mature_114_residues
SLPLRPAVAAGDFVAISGQVGVADGALVEGGISAEARQGLANLVAVLEANGLTTADVVKTNVFLTSMDDFAAMNEEYAKV
FTEDFPARSAVAVHQLPIGAVFEIEAWAYRGNQR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=111, Percent_Identity=43.2432432432432, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87082396, Length=112, Percent_Identity=42.8571428571429, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=37.1681415929204, Blast_Score=72, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=111, Percent_Identity=43.2432432432432, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=111, Percent_Identity=43.2432432432432, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982068, Length=111, Percent_Identity=43.2432432432432, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320899, Length=99, Percent_Identity=44.4444444444444, Blast_Score=79, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322138, Length=107, Percent_Identity=39.2523364485981, Blast_Score=75, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19921376, Length=112, Percent_Identity=42.8571428571429, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12040; Mature: 11909

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLRPAVAAGDFVAISGQVGVADGALVEGGISAEARQGLANLVAVLEANGLTTADVVK
CCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHEE
TNVFLTSMDDFAAMNEEYAKVFTEDFPARSAVAVHQLPIGAVFEIEAWAYRGNQR
EEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEECCCCC
>Mature Secondary Structure 
SLPLRPAVAAGDFVAISGQVGVADGALVEGGISAEARQGLANLVAVLEANGLTTADVVK
CCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHEE
TNVFLTSMDDFAAMNEEYAKVFTEDFPARSAVAVHQLPIGAVFEIEAWAYRGNQR
EEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]