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The map label for this gene is ycdM [C]

Identifier: 119715435

GI number: 119715435

Start: 1274820

End: 1275665

Strand: Reverse

Name: ycdM [C]

Synonym: Noca_1199

Alternate gene names: 119715435

Gene position: 1275665-1274820 (Counterclockwise)

Preceding gene: 119715441

Following gene: 119715432

Centisome position: 25.59

GC content: 72.93

Gene sequence:

>846_bases
ATGCGTAACGGACTCGTCCTGTTCACCTCCGACCGCGGCATCACGCCGGCCGCGCTCGGCGCCGCGGCCGAGGAGCGGGG
CTTCGACACGTTCTACGTGCCCGAGCACACCCACATCCCGGTGAAGCGGGAGGCGGCCCACCCCAGCACCGGCGACGAGA
CGCTGCCCGACGACCGCTACCTGCGCACCCTCGACCCCTGGGTCTCACTGGCCACGGTCGCCGCGGTCACCTCGCGGATC
CGGCTCTCCACCGCGGTGGCACTGCCGGTCGAGTCCGACCCGATCACGCTGGCCAAGCAGATCGCCACCCTCGACCACCT
CTCCGGCGGCCGGGTCGACATCGGCGCCGGCTTCGGTTGGAACACCGACGAGCTCGCGGACCACCACGTCCCGGCCGCGC
GCCGCCGTACGGTGCTGAAGGAGTACGTCGAGGCGATGCGCGCGCTGTGGACCCAGGAGGAGGCGTCCTACGACGGGGAG
TTCGTCTCGTTCGGGCCGTCCTGGGCCTACCCCAAGCCGGCCGGCCACATCCCGCTGGTGATCGGCGCCGGCGGCGGGCC
GAAGACGTTCCGGTGGATCGCCGAGCACGCCGACGGCTGGATGACCACGCCGACCCAGGCCGACATCTCGGCCAACATCG
AGGCGCTGCACAAGGCCTGGGCCGACGTCGGCCGCGAGGGTCGGCCCGAGATCCGGATCCTGATCGCGTTCAGGCCCGAC
CCCGCCGACCTGATGGCCTGGGCCGAGGCCGGCGCCACCGAGCTGATCTGGGGCGTGCCCGACAAGGCCCCCGACGAGGT
CCTCGCCTCGCTCGACCGCCTCGCCGGCCGCCTGGGCCTCACCTGA

Upstream 100 bases:

>100_bases
AGCGTGACGACGTCGGTCGTGAGGTCGATCCGGTGCATGCCCTCATCCAACCAGCCGCGGGACTATCGACCGAACTAGAA
CTCGTTCTAGTATCGGCCGC

Downstream 100 bases:

>100_bases
CCCCAACGCCGAGTCGGCGCATCTTGCCCGCCCCAGCACGCCGAGTCGGCGCGTCATGCCCCACCCGGTCCCCAGGTGCT
GTGGACAGGCGGGCAGTTTG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRNGLVLFTSDRGITPAALGAAAEERGFDTFYVPEHTHIPVKREAAHPSTGDETLPDDRYLRTLDPWVSLATVAAVTSRI
RLSTAVALPVESDPITLAKQIATLDHLSGGRVDIGAGFGWNTDELADHHVPAARRRTVLKEYVEAMRALWTQEEASYDGE
FVSFGPSWAYPKPAGHIPLVIGAGGGPKTFRWIAEHADGWMTTPTQADISANIEALHKAWADVGREGRPEIRILIAFRPD
PADLMAWAEAGATELIWGVPDKAPDEVLASLDRLAGRLGLT

Sequences:

>Translated_281_residues
MRNGLVLFTSDRGITPAALGAAAEERGFDTFYVPEHTHIPVKREAAHPSTGDETLPDDRYLRTLDPWVSLATVAAVTSRI
RLSTAVALPVESDPITLAKQIATLDHLSGGRVDIGAGFGWNTDELADHHVPAARRRTVLKEYVEAMRALWTQEEASYDGE
FVSFGPSWAYPKPAGHIPLVIGAGGGPKTFRWIAEHADGWMTTPTQADISANIEALHKAWADVGREGRPEIRILIAFRPD
PADLMAWAEAGATELIWGVPDKAPDEVLASLDRLAGRLGLT
>Mature_281_residues
MRNGLVLFTSDRGITPAALGAAAEERGFDTFYVPEHTHIPVKREAAHPSTGDETLPDDRYLRTLDPWVSLATVAAVTSRI
RLSTAVALPVESDPITLAKQIATLDHLSGGRVDIGAGFGWNTDELADHHVPAARRRTVLKEYVEAMRALWTQEEASYDGE
FVSFGPSWAYPKPAGHIPLVIGAGGGPKTFRWIAEHADGWMTTPTQADISANIEALHKAWADVGREGRPEIRILIAFRPD
PADLMAWAEAGATELIWGVPDKAPDEVLASLDRLAGRLGLT

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=142, Percent_Identity=30.9859154929577, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 30484; Mature: 30484

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNGLVLFTSDRGITPAALGAAAEERGFDTFYVPEHTHIPVKREAAHPSTGDETLPDDRY
CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
LRTLDPWVSLATVAAVTSRIRLSTAVALPVESDPITLAKQIATLDHLSGGRVDIGAGFGW
HHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC
NTDELADHHVPAARRRTVLKEYVEAMRALWTQEEASYDGEFVSFGPSWAYPKPAGHIPLV
CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEE
IGAGGGPKTFRWIAEHADGWMTTPTQADISANIEALHKAWADVGREGRPEIRILIAFRPD
EECCCCCHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEEEEECCC
PADLMAWAEAGATELIWGVPDKAPDEVLASLDRLAGRLGLT
HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRNGLVLFTSDRGITPAALGAAAEERGFDTFYVPEHTHIPVKREAAHPSTGDETLPDDRY
CCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
LRTLDPWVSLATVAAVTSRIRLSTAVALPVESDPITLAKQIATLDHLSGGRVDIGAGFGW
HHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC
NTDELADHHVPAARRRTVLKEYVEAMRALWTQEEASYDGEFVSFGPSWAYPKPAGHIPLV
CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEE
IGAGGGPKTFRWIAEHADGWMTTPTQADISANIEALHKAWADVGREGRPEIRILIAFRPD
EECCCCCHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEEEEECCC
PADLMAWAEAGATELIWGVPDKAPDEVLASLDRLAGRLGLT
HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]