| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715419
Identifier: 119715419
GI number: 119715419
Start: 1255989
End: 1257335
Strand: Direct
Name: 119715419
Synonym: Noca_1183
Alternate gene names: NA
Gene position: 1255989-1257335 (Clockwise)
Preceding gene: 119715418
Following gene: 119715420
Centisome position: 25.19
GC content: 68.15
Gene sequence:
>1347_bases ATGAAGCGTTCGGTCCCGGTAGGCCGCGCACTCGTTGCGCTGCTCGCCATCACGCTGGTGGCCGCTGGCTGCACCACCAG CTCCGGCAAGGAGAAGGAGGCGACAGACGATGTGGCGGTCTGCGAGCTCGCCTACTACACCGGCGAGTTCGGCTCCTACG GCGAGTCCTTGACCGCCGATGTCGTGTTCCCGGTCGAAGAGGTCATCAACGAGGATCCGCCGCTCGGCCGGTCCTGGAAG CTGTTCCACGAGGACCTCGGCACGGTGGGTGAGGCGCAGGCCGCGCGCACCTGCCTGGACCGGCACGGTGCGGAGATCCT GGTCAGCATCGCTCACGGCTACCGGACCTACCGCGACCTCATGATGGAGCGTTGGCAGGAGGAGGACAGCCCCCTCGCAC CCTCGGTTCACGGTGGGGCGATCCCTGGGAACCTCGGCGGCAAGGTCGAGGAGCCCATCTTCCGCGCTCAGGGGCTGGAC GAGACGCTCGGCATGACCGGCGCGCTCTACGCCGAGCAGATCGGCGCCAAGTCGGTGGCCATCTTCGCCACCAACGTCGA AGGCTTCCAGCTGGCGGCGGACGCCGCCGAGCGGACCGCCGAGTACCTCGGCCTCGAGGTCCTCGAGCGGATCGATGCCG GTGCCGAGCAGCCCTCCTACGTTGCCGAGGCTCGGAGGATCGCGGACCTCAACCCCGACGCGGTCATCGTCCAGGCCGGT TCCGTGGAGTCCGCAACGCTGATCAAGCAGGCCACCGAGGCGGGCATCTCCCTGGAGTGGATCGGCGAGACCGGGTGGGT CCAGCCCGAGTTCATCAAGACCCTGGGCACCGGACCGCTCGCCAAGCAGAAGGGGATCGGCTTCGCCGCCTTCTCCTACA ACGACGAGTCGCCGGCCTGGGACTTCTTCTCCGAGCTCTGGGAGAGCACACCCGGCTATGCCGACAAGTTCGGTCCGCCG AGCGACGCCTACCACTACTCGACCTATGACCTGATGGTGCAGACCGCGCTCGCGGTCGAGGCCGGCGGCTCCTACAAGGT GAGTGACTGGGCGCCGGCCATGCACGAGGTCGGGGAGGCTCCCGGGGAGGTTTGCTACACCTACGCGGACTGCCTCGAGC TCATCCGGGACGGTGAGGACATCGACTACGAGGGCATCACCGGCTCCGGCGACTACACCGACGGCGGCGTGAACCAGATC GTCCAGGCCTACACGCCCTTCGCCGAGGACGGCAGCCACGGGGAGCCGGTGGAGCTCGACGGCGAGCGTGCCATGGAGGT CGTCGAGGCCATCGCCACCGAGGCGAAGTGCGACCCGGAGAACCCGCCGAACGTCTGCGAGTGGTGA
Upstream 100 bases:
>100_bases GTCGGCCGTGATGGAGGCATCCGAGCTCACCACTGAGCAGCTGAAGCACGCCTATCAGATCTGACCAGGAAAGAACTGGC ACGGAGAGAGGAACACCCCG
Downstream 100 bases:
>100_bases GCCCCTTCGCCACTGCCTGATCGGCAGTCGCCCGCAGCCCGGGGCAGCAGTCCCGGGCTGCGGGGGTCCGAGCCTTGACG AGTGACCCACGTCACTTTAG
Product: ABC-type branched-chain amino acid transport systems periplasmic component-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 448
Protein sequence:
>448_residues MKRSVPVGRALVALLAITLVAAGCTTSSGKEKEATDDVAVCELAYYTGEFGSYGESLTADVVFPVEEVINEDPPLGRSWK LFHEDLGTVGEAQAARTCLDRHGAEILVSIAHGYRTYRDLMMERWQEEDSPLAPSVHGGAIPGNLGGKVEEPIFRAQGLD ETLGMTGALYAEQIGAKSVAIFATNVEGFQLAADAAERTAEYLGLEVLERIDAGAEQPSYVAEARRIADLNPDAVIVQAG SVESATLIKQATEAGISLEWIGETGWVQPEFIKTLGTGPLAKQKGIGFAAFSYNDESPAWDFFSELWESTPGYADKFGPP SDAYHYSTYDLMVQTALAVEAGGSYKVSDWAPAMHEVGEAPGEVCYTYADCLELIRDGEDIDYEGITGSGDYTDGGVNQI VQAYTPFAEDGSHGEPVELDGERAMEVVEAIATEAKCDPENPPNVCEW
Sequences:
>Translated_448_residues MKRSVPVGRALVALLAITLVAAGCTTSSGKEKEATDDVAVCELAYYTGEFGSYGESLTADVVFPVEEVINEDPPLGRSWK LFHEDLGTVGEAQAARTCLDRHGAEILVSIAHGYRTYRDLMMERWQEEDSPLAPSVHGGAIPGNLGGKVEEPIFRAQGLD ETLGMTGALYAEQIGAKSVAIFATNVEGFQLAADAAERTAEYLGLEVLERIDAGAEQPSYVAEARRIADLNPDAVIVQAG SVESATLIKQATEAGISLEWIGETGWVQPEFIKTLGTGPLAKQKGIGFAAFSYNDESPAWDFFSELWESTPGYADKFGPP SDAYHYSTYDLMVQTALAVEAGGSYKVSDWAPAMHEVGEAPGEVCYTYADCLELIRDGEDIDYEGITGSGDYTDGGVNQI VQAYTPFAEDGSHGEPVELDGERAMEVVEAIATEAKCDPENPPNVCEW >Mature_448_residues MKRSVPVGRALVALLAITLVAAGCTTSSGKEKEATDDVAVCELAYYTGEFGSYGESLTADVVFPVEEVINEDPPLGRSWK LFHEDLGTVGEAQAARTCLDRHGAEILVSIAHGYRTYRDLMMERWQEEDSPLAPSVHGGAIPGNLGGKVEEPIFRAQGLD ETLGMTGALYAEQIGAKSVAIFATNVEGFQLAADAAERTAEYLGLEVLERIDAGAEQPSYVAEARRIADLNPDAVIVQAG SVESATLIKQATEAGISLEWIGETGWVQPEFIKTLGTGPLAKQKGIGFAAFSYNDESPAWDFFSELWESTPGYADKFGPP SDAYHYSTYDLMVQTALAVEAGGSYKVSDWAPAMHEVGEAPGEVCYTYADCLELIRDGEDIDYEGITGSGDYTDGGVNQI VQAYTPFAEDGSHGEPVELDGERAMEVVEAIATEAKCDPENPPNVCEW
Specific function: Unknown
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48085; Mature: 48085
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSVPVGRALVALLAITLVAAGCTTSSGKEKEATDDVAVCELAYYTGEFGSYGESLTAD CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH VVFPVEEVINEDPPLGRSWKLFHEDLGTVGEAQAARTCLDRHGAEILVSIAHGYRTYRDL EEECHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEHHHHHHHHHHHHH MMERWQEEDSPLAPSVHGGAIPGNLGGKVEEPIFRAQGLDETLGMTGALYAEQIGAKSVA HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCHHHHHHHHHCCCEEE IFATNVEGFQLAADAAERTAEYLGLEVLERIDAGAEQPSYVAEARRIADLNPDAVIVQAG EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECC SVESATLIKQATEAGISLEWIGETGWVQPEFIKTLGTGPLAKQKGIGFAAFSYNDESPAW CCCHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHCCCCCCHHCCCEEEEEECCCCCCHH DFFSELWESTPGYADKFGPPSDAYHYSTYDLMVQTALAVEAGGSYKVSDWAPAMHEVGEA HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHCCC PGEVCYTYADCLELIRDGEDIDYEGITGSGDYTDGGVNQIVQAYTPFAEDGSHGEPVELD CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEC GERAMEVVEAIATEAKCDPENPPNVCEW HHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MKRSVPVGRALVALLAITLVAAGCTTSSGKEKEATDDVAVCELAYYTGEFGSYGESLTAD CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH VVFPVEEVINEDPPLGRSWKLFHEDLGTVGEAQAARTCLDRHGAEILVSIAHGYRTYRDL EEECHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEHHHHHHHHHHHHH MMERWQEEDSPLAPSVHGGAIPGNLGGKVEEPIFRAQGLDETLGMTGALYAEQIGAKSVA HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCHHHHHHHHHCCCEEE IFATNVEGFQLAADAAERTAEYLGLEVLERIDAGAEQPSYVAEARRIADLNPDAVIVQAG EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECC SVESATLIKQATEAGISLEWIGETGWVQPEFIKTLGTGPLAKQKGIGFAAFSYNDESPAW CCCHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHCCCCCCHHCCCEEEEEECCCCCCHH DFFSELWESTPGYADKFGPPSDAYHYSTYDLMVQTALAVEAGGSYKVSDWAPAMHEVGEA HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHCCC PGEVCYTYADCLELIRDGEDIDYEGITGSGDYTDGGVNQIVQAYTPFAEDGSHGEPVELD CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEC GERAMEVVEAIATEAKCDPENPPNVCEW HHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA