| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is livF [H]
Identifier: 119715418
GI number: 119715418
Start: 1255242
End: 1255952
Strand: Direct
Name: livF [H]
Synonym: Noca_1182
Alternate gene names: 119715418
Gene position: 1255242-1255952 (Clockwise)
Preceding gene: 119715417
Following gene: 119715419
Centisome position: 25.18
GC content: 67.23
Gene sequence:
>711_bases ATGTCTGAGGCCACCAGGGTGCTCGAGGTCAGCGGCCTGCGAGCCGGCTACGACGGGATCGCCGTCCTCGACGAGGTCGA CTTCACGGTCGGCGACGAGGTCTTCGCGATCCTGGGCGCCAATGGCGCAGGGAAGACGACCCTCCTTGCCACGCTGGCAC GCCTCAATCCGTTGATGGCCGGGACCGTCACCTTCAAAGGCACCGACATCAGCCGGATGAGGGCCTACCAGAGCGCGGGC CTCGGTGTGGGGTACGTGCCCCAGGAGCGCGGTGTCTTCCCCGACCTGACCGTCATGGACAACCTGCGAGTGGGCGGGAT GTTCGGCGACCGGTCTGTGTCCGAGCGCGTCGACGAGGTCTTCACGTTCTTCCCTGACCTCAAGCGCAAGCTGAACCTGC GCGCCGGAACCCTCAGCGGCGGCGAGTCGCGCATGGTCGCCTGCGGTCGCGCCCTCATGCAGGATCCCACGCTCCTCCTC CTCGACGAACCGACCGCGGGGCTGTCCCCGCTGTACGTCAGCACGTTCTTCGAGGCCATCCGGCGCATCCGCGACGAACG GCAGGTGGCCATCGTCGTCGCGGAGCAGAACGCCACGCAGGCACTCGGGGTCGCCGACCGCGTGATGGTGCTCAGCCTCG GCCAGAAGTCGGCCGTGATGGAGGCATCCGAGCTCACCACTGAGCAGCTGAAGCACGCCTATCAGATCTGA
Upstream 100 bases:
>100_bases CAGGTGACCTTCATGGCCGAAGGCCGGGTGATGCTCCGCGGTGAGCCGTCGGAGATCCGGGAACACGGGACCGTCGTCGA GAGCTACCTGGGCCAGGGTC
Downstream 100 bases:
>100_bases CCAGGAAAGAACTGGCACGGAGAGAGGAACACCCCGATGAAGCGTTCGGTCCCGGTAGGCCGCGCACTCGTTGCGCTGCT CGCCATCACGCTGGTGGCCG
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MSEATRVLEVSGLRAGYDGIAVLDEVDFTVGDEVFAILGANGAGKTTLLATLARLNPLMAGTVTFKGTDISRMRAYQSAG LGVGYVPQERGVFPDLTVMDNLRVGGMFGDRSVSERVDEVFTFFPDLKRKLNLRAGTLSGGESRMVACGRALMQDPTLLL LDEPTAGLSPLYVSTFFEAIRRIRDERQVAIVVAEQNATQALGVADRVMVLSLGQKSAVMEASELTTEQLKHAYQI
Sequences:
>Translated_236_residues MSEATRVLEVSGLRAGYDGIAVLDEVDFTVGDEVFAILGANGAGKTTLLATLARLNPLMAGTVTFKGTDISRMRAYQSAG LGVGYVPQERGVFPDLTVMDNLRVGGMFGDRSVSERVDEVFTFFPDLKRKLNLRAGTLSGGESRMVACGRALMQDPTLLL LDEPTAGLSPLYVSTFFEAIRRIRDERQVAIVVAEQNATQALGVADRVMVLSLGQKSAVMEASELTTEQLKHAYQI >Mature_235_residues SEATRVLEVSGLRAGYDGIAVLDEVDFTVGDEVFAILGANGAGKTTLLATLARLNPLMAGTVTFKGTDISRMRAYQSAGL GVGYVPQERGVFPDLTVMDNLRVGGMFGDRSVSERVDEVFTFFPDLKRKLNLRAGTLSGGESRMVACGRALMQDPTLLLL DEPTAGLSPLYVSTFFEAIRRIRDERQVAIVVAEQNATQALGVADRVMVLSLGQKSAVMEASELTTEQLKHAYQI
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=222, Percent_Identity=32.4324324324324, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI153792144, Length=218, Percent_Identity=32.5688073394495, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI31657092, Length=205, Percent_Identity=29.2682926829268, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI105990541, Length=200, Percent_Identity=29.5, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI21536376, Length=229, Percent_Identity=28.3842794759825, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI27436953, Length=218, Percent_Identity=30.7339449541284, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27262624, Length=198, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI27262626, Length=198, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9955963, Length=206, Percent_Identity=31.0679611650485, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI116734710, Length=185, Percent_Identity=29.7297297297297, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI6005701, Length=190, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI156105685, Length=189, Percent_Identity=32.2751322751323, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI148612844, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI255708477, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI47078218, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI45446740, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI9961252, Length=197, Percent_Identity=30.4568527918782, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI42741659, Length=195, Percent_Identity=30.2564102564103, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI4505771, Length=197, Percent_Identity=30.4568527918782, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI42490749, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI171184400, Length=215, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592898, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592978, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592915, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592971, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592964, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592956, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI150417984, Length=192, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI9961250, Length=204, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI87082268, Length=211, Percent_Identity=42.1800947867299, Blast_Score=155, Evalue=2e-39, Organism=Escherichia coli, GI1787792, Length=220, Percent_Identity=32.2727272727273, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI48995001, Length=234, Percent_Identity=32.4786324786325, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1788472, Length=237, Percent_Identity=31.2236286919831, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789593, Length=233, Percent_Identity=33.9055793991416, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=30.2325581395349, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=28.8135593220339, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1789864, Length=226, Percent_Identity=27.8761061946903, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI87081834, Length=193, Percent_Identity=31.6062176165803, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=33.1838565022422, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=27.1493212669683, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1790190, Length=231, Percent_Identity=27.7056277056277, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=27.5229357798165, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1788210, Length=223, Percent_Identity=26.457399103139, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=28.2511210762332, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=29.7872340425532, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87082267, Length=214, Percent_Identity=29.4392523364486, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790544, Length=257, Percent_Identity=26.0700389105058, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786319, Length=169, Percent_Identity=37.2781065088757, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=26.0089686098655, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=22.6890756302521, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=27.4418604651163, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787029, Length=213, Percent_Identity=26.2910798122066, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI87081782, Length=215, Percent_Identity=30.2325581395349, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786872, Length=187, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790162, Length=248, Percent_Identity=26.6129032258064, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1789032, Length=220, Percent_Identity=26.8181818181818, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788450, Length=227, Percent_Identity=26.431718061674, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=23.6363636363636, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081709, Length=198, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI48994943, Length=229, Percent_Identity=27.5109170305677, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788897, Length=220, Percent_Identity=27.7272727272727, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786698, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1786703, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=26.6968325791855, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789873, Length=145, Percent_Identity=34.4827586206897, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786981, Length=188, Percent_Identity=33.5106382978723, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786398, Length=222, Percent_Identity=26.5765765765766, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=27.9279279279279, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1788165, Length=185, Percent_Identity=29.7297297297297, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786253, Length=189, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1787041, Length=170, Percent_Identity=34.1176470588235, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787164, Length=195, Percent_Identity=27.6923076923077, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17510237, Length=226, Percent_Identity=28.3185840707965, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71992285, Length=204, Percent_Identity=30.3921568627451, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=29.5566502463054, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI212646699, Length=216, Percent_Identity=30.5555555555556, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71983516, Length=199, Percent_Identity=25.6281407035176, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71983510, Length=199, Percent_Identity=25.6281407035176, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71983523, Length=199, Percent_Identity=25.6281407035176, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71984940, Length=199, Percent_Identity=26.6331658291457, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17552232, Length=201, Percent_Identity=29.8507462686567, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI25146777, Length=216, Percent_Identity=26.8518518518519, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71996809, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193211017, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565938, Length=212, Percent_Identity=26.4150943396226, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565586, Length=204, Percent_Identity=25, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17539902, Length=227, Percent_Identity=29.5154185022026, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17541710, Length=207, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115533592, Length=182, Percent_Identity=29.1208791208791, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193209708, Length=204, Percent_Identity=30.3921568627451, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193202349, Length=220, Percent_Identity=28.1818181818182, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=214, Percent_Identity=28.5046728971963, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI24650853, Length=186, Percent_Identity=31.1827956989247, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI281362751, Length=186, Percent_Identity=31.1827956989247, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24650855, Length=186, Percent_Identity=31.1827956989247, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24643674, Length=188, Percent_Identity=27.6595744680851, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24666092, Length=211, Percent_Identity=27.0142180094787, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI21357907, Length=216, Percent_Identity=31.4814814814815, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI221512771, Length=188, Percent_Identity=27.6595744680851, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24582014, Length=184, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24582012, Length=184, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI85725262, Length=181, Percent_Identity=29.8342541436464, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574150, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007328, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574533, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI28571871, Length=197, Percent_Identity=31.4720812182741, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI85726357, Length=209, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI221500419, Length=197, Percent_Identity=30.9644670050761, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25468; Mature: 25336
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEATRVLEVSGLRAGYDGIAVLDEVDFTVGDEVFAILGANGAGKTTLLATLARLNPLMA CCCHHHEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEE GTVTFKGTDISRMRAYQSAGLGVGYVPQERGVFPDLTVMDNLRVGGMFGDRSVSERVDEV EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCEECCCCCCCHHHHHHHHH FTFFPDLKRKLNLRAGTLSGGESRMVACGRALMQDPTLLLLDEPTAGLSPLYVSTFFEAI HHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH RRIRDERQVAIVVAEQNATQALGVADRVMVLSLGQKSAVMEASELTTEQLKHAYQI HHHCCCCEEEEEEECCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SEATRVLEVSGLRAGYDGIAVLDEVDFTVGDEVFAILGANGAGKTTLLATLARLNPLMA CCHHHEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEE GTVTFKGTDISRMRAYQSAGLGVGYVPQERGVFPDLTVMDNLRVGGMFGDRSVSERVDEV EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCEECCCCCCCHHHHHHHHH FTFFPDLKRKLNLRAGTLSGGESRMVACGRALMQDPTLLLLDEPTAGLSPLYVSTFFEAI HHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH RRIRDERQVAIVVAEQNATQALGVADRVMVLSLGQKSAVMEASELTTEQLKHAYQI HHHCCCCEEEEEEECCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]