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The map label for this gene is deoC [H]

Identifier: 119714808

GI number: 119714808

Start: 578474

End: 579169

Strand: Reverse

Name: deoC [H]

Synonym: Noca_0544

Alternate gene names: 119714808

Gene position: 579169-578474 (Counterclockwise)

Preceding gene: 119714809

Following gene: 119714807

Centisome position: 11.62

GC content: 72.99

Gene sequence:

>696_bases
ATGACCGAATACGCCTCGCTCACGCCAGCCGAGCTGGCCCCCTACATCCAGCACACCCTGATCGCGGTGGGGACCACCCG
CGAGCAGACCATCGCGCACGCCCAGCAGTGCGTCGAGCACGGCTTCGACGCGGCGATGGTCGCGGGCTCGTGGGTCGGCC
TCACCGCGGAGGTGCTCGCCGGCACCGGCATCACCGTGGCCTCCGCACTGGACTTCCCGACCGTCGGGGTGATGACCAGC
GCCGGCAAGGCGGCCGAGGCCGCCGAGCTCGTCCGGCTCGGCGCGCGCGAGCTGGACATCGGGGTCCAGGTCGGCTGGCT
CCGCAGCGGCGACCACGACGCCTTCCGCGAGGACATCGCCGGCGTCGTCCGCGCCGCGGGCGTCCCCGTCAAGGTGATGC
TCGAGCTCCCCCTCCTCACCCCGTCCGAGCGCGATGCCGCGGTCGACCTCGCCTGCGAGGCGGGCGCGGCGTACCTGAAG
AACGCGAGCAGCGGCGCGATCGAGGTCGCGAGCCCGGCGAGCATCCGCTACCTGGTCGACCGGGCACCCGCCGGCGTGCT
GGTCAAGGCGTCCGGAGGGATCAAGAGCCGCGACCAGATCGTGGCCCTGCTCGAGGCCGGTGCCGCCAAGGTCGGCACCA
GCGCCGGGGTCGAGGTCGTCACCGACTCAGCCGACGAGGACACCGAGAGCTACTGA

Upstream 100 bases:

>100_bases
TTCCCCGGTCTGCCGCGCCGGACCGACCTCGACACCGAACCCGACCTCACCTGACCGCAGGCCGGACCGCCCGCGCCCCA
AGTTCCCCGGAAGGACACCG

Downstream 100 bases:

>100_bases
TGGCGGAGGACTTCGCGGAGGGATTGCCTGCGGGCCTGCACAGTGCTGCCCCAGGCACCCTTCACTCCAGGATCTCGGCC
TGGTTGCGCGAACGGATCGC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTEYASLTPAELAPYIQHTLIAVGTTREQTIAHAQQCVEHGFDAAMVAGSWVGLTAEVLAGTGITVASALDFPTVGVMTS
AGKAAEAAELVRLGARELDIGVQVGWLRSGDHDAFREDIAGVVRAAGVPVKVMLELPLLTPSERDAAVDLACEAGAAYLK
NASSGAIEVASPASIRYLVDRAPAGVLVKASGGIKSRDQIVALLEAGAAKVGTSAGVEVVTDSADEDTESY

Sequences:

>Translated_231_residues
MTEYASLTPAELAPYIQHTLIAVGTTREQTIAHAQQCVEHGFDAAMVAGSWVGLTAEVLAGTGITVASALDFPTVGVMTS
AGKAAEAAELVRLGARELDIGVQVGWLRSGDHDAFREDIAGVVRAAGVPVKVMLELPLLTPSERDAAVDLACEAGAAYLK
NASSGAIEVASPASIRYLVDRAPAGVLVKASGGIKSRDQIVALLEAGAAKVGTSAGVEVVTDSADEDTESY
>Mature_230_residues
TEYASLTPAELAPYIQHTLIAVGTTREQTIAHAQQCVEHGFDAAMVAGSWVGLTAEVLAGTGITVASALDFPTVGVMTSA
GKAAEAAELVRLGARELDIGVQVGWLRSGDHDAFREDIAGVVRAAGVPVKVMLELPLLTPSERDAAVDLACEAGAAYLKN
ASSGAIEVASPASIRYLVDRAPAGVLVKASGGIKSRDQIVALLEAGAAKVGTSAGVEVVTDSADEDTESY

Specific function: Unknown

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23645; Mature: 23514

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS50972 PTERIN_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYASLTPAELAPYIQHTLIAVGTTREQTIAHAQQCVEHGFDAAMVAGSWVGLTAEVLA
CCCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHH
GTGITVASALDFPTVGVMTSAGKAAEAAELVRLGARELDIGVQVGWLRSGDHDAFREDIA
CCCCEEEHHCCCCCHHEEECCCCHHHHHHHHHHCCCEEECCEEEEEEECCCHHHHHHHHH
GVVRAAGVPVKVMLELPLLTPSERDAAVDLACEAGAAYLKNASSGAIEVASPASIRYLVD
HHHHHCCCCEEEEEEECCCCCCCCCCEEEEHHHHCHHHHHCCCCCEEEECCCCCEEEEEE
RAPAGVLVKASGGIKSRDQIVALLEAGAAKVGTSAGVEVVTDSADEDTESY
CCCCCEEEECCCCCCCHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
TEYASLTPAELAPYIQHTLIAVGTTREQTIAHAQQCVEHGFDAAMVAGSWVGLTAEVLA
CCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHH
GTGITVASALDFPTVGVMTSAGKAAEAAELVRLGARELDIGVQVGWLRSGDHDAFREDIA
CCCCEEEHHCCCCCHHEEECCCCHHHHHHHHHHCCCEEECCEEEEEEECCCHHHHHHHHH
GVVRAAGVPVKVMLELPLLTPSERDAAVDLACEAGAAYLKNASSGAIEVASPASIRYLVD
HHHHHCCCCEEEEEEECCCCCCCCCCEEEEHHHHCHHHHHCCCCCEEEECCCCCEEEEEE
RAPAGVLVKASGGIKSRDQIVALLEAGAAKVGTSAGVEVVTDSADEDTESY
CCCCCEEEECCCCCCCHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]