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The map label for this gene is yvoA [H]

Identifier: 119714807

GI number: 119714807

Start: 577710

End: 578474

Strand: Reverse

Name: yvoA [H]

Synonym: Noca_0543

Alternate gene names: 119714807

Gene position: 578474-577710 (Counterclockwise)

Preceding gene: 119714808

Following gene: 119714806

Centisome position: 11.6

GC content: 72.55

Gene sequence:

>765_bases
ATGGCGGAGGACTTCGCGGAGGGATTGCCTGCGGGCCTGCACAGTGCTGCCCCAGGCACCCTTCACTCCAGGATCTCGGC
CTGGTTGCGCGAACGGATCGCCACCGGCGCGTGGCCGCCCCACTACCGGCTCAAGCCCGAGCCGGAGCTCGCCGCGGCGC
TCGGCGTGAGCCGGGGCACCCTGCGGCGCGCCCTGGCCACCCTGATCGCCGAGGGCGCCCTCGTGCAGGTCCGTGGCAAG
GGCACCTTCGTTACCTCCACGCTCGTCGAGCCCGCCATCGCCCAGAAGCTGACCAGCCTGGCCGAGGACTTCGCCGACCA
GGGCAGCCCGCTGAGCACCGAGGTGCTCGAGTGCCGACTGCTCACGCCGCCCGCGCCGGTCGCGGCCCTGCTGGACACGC
CCGTCGGCCGCCCGATCCTGCACCTGGTGCGGCTGCGGAGCACCCCCGAGGGACCGGTCGCGCTGCTCGACAACTACGTC
CGCACCGACCTTGCCCCCGGCCTGGAGGAGACCGACTTCACCGAGGCCACCCTGTTCGGGGCGCTCGCCAGCCGGCACGG
CCTGCACATCGCGACCGGTCGTCGCACCTTCACCGCCACGCTCGCCGACCAGAAGCAGGCAGCGTTGCTAGATCTCGCGC
CCGGCAGCCCGCTGCAGCACCTCGAGCAGGTGACCTACCTCGGCGACGGCTCGCCGATCGAGTACTCCGACGTCTGGATC
CGCTCCGACCGGCTCCGCGTCACCTCCCTGCTGACCCGCCACTGA

Upstream 100 bases:

>100_bases
AGATCGTGGCCCTGCTCGAGGCCGGTGCCGCCAAGGTCGGCACCAGCGCCGGGGTCGAGGTCGTCACCGACTCAGCCGAC
GAGGACACCGAGAGCTACTG

Downstream 100 bases:

>100_bases
CCTCCACAGGAGACCCTCGTGCCCGTCCCGTTCATCCTCGACACCGACACCGCGCAAGACGACTGCGTGGCCATCATCGC
CGGGATCCTCGACCCCGAGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MAEDFAEGLPAGLHSAAPGTLHSRISAWLRERIATGAWPPHYRLKPEPELAAALGVSRGTLRRALATLIAEGALVQVRGK
GTFVTSTLVEPAIAQKLTSLAEDFADQGSPLSTEVLECRLLTPPAPVAALLDTPVGRPILHLVRLRSTPEGPVALLDNYV
RTDLAPGLEETDFTEATLFGALASRHGLHIATGRRTFTATLADQKQAALLDLAPGSPLQHLEQVTYLGDGSPIEYSDVWI
RSDRLRVTSLLTRH

Sequences:

>Translated_254_residues
MAEDFAEGLPAGLHSAAPGTLHSRISAWLRERIATGAWPPHYRLKPEPELAAALGVSRGTLRRALATLIAEGALVQVRGK
GTFVTSTLVEPAIAQKLTSLAEDFADQGSPLSTEVLECRLLTPPAPVAALLDTPVGRPILHLVRLRSTPEGPVALLDNYV
RTDLAPGLEETDFTEATLFGALASRHGLHIATGRRTFTATLADQKQAALLDLAPGSPLQHLEQVTYLGDGSPIEYSDVWI
RSDRLRVTSLLTRH
>Mature_253_residues
AEDFAEGLPAGLHSAAPGTLHSRISAWLRERIATGAWPPHYRLKPEPELAAALGVSRGTLRRALATLIAEGALVQVRGKG
TFVTSTLVEPAIAQKLTSLAEDFADQGSPLSTEVLECRLLTPPAPVAALLDTPVGRPILHLVRLRSTPEGPVALLDNYVR
TDLAPGLEETDFTEATLFGALASRHGLHIATGRRTFTATLADQKQAALLDLAPGSPLQHLEQVTYLGDGSPIEYSDVWIR
SDRLRVTSLLTRH

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=245, Percent_Identity=26.530612244898, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=26.6094420600858, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786950, Length=236, Percent_Identity=28.3898305084746, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790540, Length=216, Percent_Identity=30.0925925925926, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27264; Mature: 27133

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEDFAEGLPAGLHSAAPGTLHSRISAWLRERIATGAWPPHYRLKPEPELAAALGVSRGT
CCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHH
LRRALATLIAEGALVQVRGKGTFVTSTLVEPAIAQKLTSLAEDFADQGSPLSTEVLECRL
HHHHHHHHHHCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEE
LTPPAPVAALLDTPVGRPILHLVRLRSTPEGPVALLDNYVRTDLAPGLEETDFTEATLFG
CCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
ALASRHGLHIATGRRTFTATLADQKQAALLDLAPGSPLQHLEQVTYLGDGSPIEYSDVWI
HHHHCCCEEEEECCEEEEEEHHCCCHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEE
RSDRLRVTSLLTRH
ECCCHHHHHHHHCC
>Mature Secondary Structure 
AEDFAEGLPAGLHSAAPGTLHSRISAWLRERIATGAWPPHYRLKPEPELAAALGVSRGT
CCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHH
LRRALATLIAEGALVQVRGKGTFVTSTLVEPAIAQKLTSLAEDFADQGSPLSTEVLECRL
HHHHHHHHHHCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEE
LTPPAPVAALLDTPVGRPILHLVRLRSTPEGPVALLDNYVRTDLAPGLEETDFTEATLFG
CCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
ALASRHGLHIATGRRTFTATLADQKQAALLDLAPGSPLQHLEQVTYLGDGSPIEYSDVWI
HHHHCCCEEEEECCEEEEEEHHCCCHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEE
RSDRLRVTSLLTRH
ECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]