| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is yuxG [H]
Identifier: 119714666
GI number: 119714666
Start: 430624
End: 432582
Strand: Reverse
Name: yuxG [H]
Synonym: Noca_0401
Alternate gene names: 119714666
Gene position: 432582-430624 (Counterclockwise)
Preceding gene: 119714667
Following gene: 119714665
Centisome position: 8.68
GC content: 72.28
Gene sequence:
>1959_bases GTGCCATTCGCGATGTCCCCGGCGGCGTCGGCCGCTCTGACCGATCTCGTCAGGGTGTCCCGGCTCCTGGGTGCCGACCC CGCGCTCGTCCTTCACGGCGGCGGGAACACGAGCCTGAAGGCCACGACCACCGACCTGACCGGGTCGACCGTGGACACCC TCTTCGTCAAGGCGAGCGGACACGACCTCGCCTCGATCGACGCGGCCGGCTTCGCACCGCTCCGGCTGGCACGCCTGCGC GAGATCCTGCCGCCCGTCGTCGTTCCCGACGACCTGCTCATCAACGAGCTGCGCTGTGCGCTGCTCGACGCGGCGGCACC GGATCCCTCGGTGGAGACCCTGCTGCACGCGCTGCTGCCCCGACCGGCCGTCATCCACTCACACGCCGACGCGTTGCTCG CGGTCGCCAACACACCCGATGGCCGCGAGCGGCTCGCCGACCTCTTCGGGGATCGCGTGATCCTGGTGGACTACGCCATG CCGGGACCAGACCTGGTGGCCGCCTGCGCGGCCGCCTGGAGCCGGGAGGGCGGCAACCACACCCAGGGCGTCGTCGTGCT GGGGCACGGCCTGTTCACCGTCGGCTCCACGCCGGACGAGGCGTACCAGCACCACGTCGATCTGGTCACGGACGTGGCCG GCCTCCTGCGCGCATCCTCGACGCGCGGCCAGTCGCAGCCGGCTGCGCCCCTGCCGCCTGCAGACCCGCTGGCCGTGGCC CGGCTGCGGCAGTCCCTGAGCCGGGCCGCCGGGCACCCGATGGTGGTCACCTCCCACCGCGACAACGAGGTTGCGTCCTT CGTCGGGGACGACCGCCTGCTCGCGGCCGCTCAGCGCGGGCCGCTCACCCCCGACCACGTCATCTGGACCAAGCACAGCC CGATGATCGGCACCGATCTGGACGCCTTCGTCCGGGCCGAGGACGACTACTTCACCCGGCACGCCACGCGCCGCGGCCGC ACCCTGCTGCGGCTCGATGGGGCGCCCCGGGTGGTGCTCGATCGCACCCTCGGCATGCTCACCGCGGGACGAACGGCAGG CGAGGCGGCGCGAACCGCGGACATCTACCGGCACACCCTCGGCGCGATCGAGCTGGCCGAGGCCCTCGGCGGCTACCGGC CGGTCGAGGAGGAGCACGTCTTCGACCTCGAGTACTGGTCGCTGCAGCAGGCGAAGCTCTCCCGCAAGGACAGCCATCGC CCGCTCTCCGGCCAGGTGGCGGTCGTGACCGGCGCGGCCTCGGGCATCGGGCACGCGTGCGCGGTCAGCCTGCTGGAGTC GGGCGCCAGCGTGGTGGGCTGGGACGTCAGCCCATCGGTACGCGACGCGATCTCCTCACCGGAGTGGCTCGGGCTCGCCG TCGACGTCACCGACTCCGCTGCGGTGACCGAGGCCATCCAGCGCGGGGTGGAGGCCTTCGGTGGGGTGGACATCCTCGTC GTCGCGGCGGGCATCTTCCCCACCAGCGCCAACCTCGGCGAGATGTCGATGCAGGCCTGGCGCCGGGCGATGGCGGTGAA CGTCGACGCGGTCGCGGACCTCTACGGACAGATCCACCCGTTCCTCGCCGCAGGCACCCCTTACGGCCGCGTCGTGCTGA TCGCGTCGAAGAACGTCGCCGCCCCGGGCCCTGGCGCCGCGGCCTACTCCGCGTCCAAGGCAGCGGTGACCCAGCTGACC CGGGTCGCGGCCCTCGAGTGGGCCCCCCATGGCATCCGCGTCAACATGATCCACCCCGACGCCGTGTTCGACACGGGCCT GTGGACACCGGAGCTGCTCGAGGCGCGAGCCGAGCACTACGGCATGACGGTCGAGCAGTACAAGCGTCGCAATCTCCTCT CCACGGAGGTCACGAGCAAGGCGGTCGGGGACCTGGCCGTCACCCTGGCGGGTCCCGCCTTCGCCGCCACGACCGGCGCC CAGATTCCCATCGACGGCGGCAACGAGCGGGTCATCTGA
Upstream 100 bases:
>100_bases CGTCACGGGCCGGGCGATCATGGCGTCTCCACTTGACGACCTGGCAACTCATCTCTAGGTTGTCTTACAACTTGGAAGCA GGTGTGGGAAGTTGTCCGGT
Downstream 100 bases:
>100_bases ACCGGCCACCGCCCACCGCACACATGAGCGAGGACACATGAAATCCGGATCCACCAACGATCTCGAGTACCGCTTCGGCG ACCACGGGCCGGCCTACGTC
Product: short chain dehydrogenase
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 652; Mature: 651
Protein sequence:
>652_residues MPFAMSPAASAALTDLVRVSRLLGADPALVLHGGGNTSLKATTTDLTGSTVDTLFVKASGHDLASIDAAGFAPLRLARLR EILPPVVVPDDLLINELRCALLDAAAPDPSVETLLHALLPRPAVIHSHADALLAVANTPDGRERLADLFGDRVILVDYAM PGPDLVAACAAAWSREGGNHTQGVVVLGHGLFTVGSTPDEAYQHHVDLVTDVAGLLRASSTRGQSQPAAPLPPADPLAVA RLRQSLSRAAGHPMVVTSHRDNEVASFVGDDRLLAAAQRGPLTPDHVIWTKHSPMIGTDLDAFVRAEDDYFTRHATRRGR TLLRLDGAPRVVLDRTLGMLTAGRTAGEAARTADIYRHTLGAIELAEALGGYRPVEEEHVFDLEYWSLQQAKLSRKDSHR PLSGQVAVVTGAASGIGHACAVSLLESGASVVGWDVSPSVRDAISSPEWLGLAVDVTDSAAVTEAIQRGVEAFGGVDILV VAAGIFPTSANLGEMSMQAWRRAMAVNVDAVADLYGQIHPFLAAGTPYGRVVLIASKNVAAPGPGAAAYSASKAAVTQLT RVAALEWAPHGIRVNMIHPDAVFDTGLWTPELLEARAEHYGMTVEQYKRRNLLSTEVTSKAVGDLAVTLAGPAFAATTGA QIPIDGGNERVI
Sequences:
>Translated_652_residues MPFAMSPAASAALTDLVRVSRLLGADPALVLHGGGNTSLKATTTDLTGSTVDTLFVKASGHDLASIDAAGFAPLRLARLR EILPPVVVPDDLLINELRCALLDAAAPDPSVETLLHALLPRPAVIHSHADALLAVANTPDGRERLADLFGDRVILVDYAM PGPDLVAACAAAWSREGGNHTQGVVVLGHGLFTVGSTPDEAYQHHVDLVTDVAGLLRASSTRGQSQPAAPLPPADPLAVA RLRQSLSRAAGHPMVVTSHRDNEVASFVGDDRLLAAAQRGPLTPDHVIWTKHSPMIGTDLDAFVRAEDDYFTRHATRRGR TLLRLDGAPRVVLDRTLGMLTAGRTAGEAARTADIYRHTLGAIELAEALGGYRPVEEEHVFDLEYWSLQQAKLSRKDSHR PLSGQVAVVTGAASGIGHACAVSLLESGASVVGWDVSPSVRDAISSPEWLGLAVDVTDSAAVTEAIQRGVEAFGGVDILV VAAGIFPTSANLGEMSMQAWRRAMAVNVDAVADLYGQIHPFLAAGTPYGRVVLIASKNVAAPGPGAAAYSASKAAVTQLT RVAALEWAPHGIRVNMIHPDAVFDTGLWTPELLEARAEHYGMTVEQYKRRNLLSTEVTSKAVGDLAVTLAGPAFAATTGA QIPIDGGNERVI >Mature_651_residues PFAMSPAASAALTDLVRVSRLLGADPALVLHGGGNTSLKATTTDLTGSTVDTLFVKASGHDLASIDAAGFAPLRLARLRE ILPPVVVPDDLLINELRCALLDAAAPDPSVETLLHALLPRPAVIHSHADALLAVANTPDGRERLADLFGDRVILVDYAMP GPDLVAACAAAWSREGGNHTQGVVVLGHGLFTVGSTPDEAYQHHVDLVTDVAGLLRASSTRGQSQPAAPLPPADPLAVAR LRQSLSRAAGHPMVVTSHRDNEVASFVGDDRLLAAAQRGPLTPDHVIWTKHSPMIGTDLDAFVRAEDDYFTRHATRRGRT LLRLDGAPRVVLDRTLGMLTAGRTAGEAARTADIYRHTLGAIELAEALGGYRPVEEEHVFDLEYWSLQQAKLSRKDSHRP LSGQVAVVTGAASGIGHACAVSLLESGASVVGWDVSPSVRDAISSPEWLGLAVDVTDSAAVTEAIQRGVEAFGGVDILVV AAGIFPTSANLGEMSMQAWRRAMAVNVDAVADLYGQIHPFLAAGTPYGRVVLIASKNVAAPGPGAAAYSASKAAVTQLTR VAALEWAPHGIRVNMIHPDAVFDTGLWTPELLEARAEHYGMTVEQYKRRNLLSTEVTSKAVGDLAVTLAGPAFAATTGAQ IPIDGGNERVI
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: COG3347
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI33667109, Length=227, Percent_Identity=32.5991189427313, Blast_Score=89, Evalue=2e-17, Organism=Homo sapiens, GI5031737, Length=192, Percent_Identity=34.8958333333333, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI32483357, Length=205, Percent_Identity=31.219512195122, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI126723191, Length=214, Percent_Identity=29.4392523364486, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI7705925, Length=187, Percent_Identity=31.5508021390374, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=1e-10, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=31.7460317460317, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=30.9803921568627, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1789208, Length=183, Percent_Identity=32.7868852459016, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1787335, Length=182, Percent_Identity=34.0659340659341, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1788459, Length=194, Percent_Identity=31.9587628865979, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1789378, Length=190, Percent_Identity=27.3684210526316, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI87082160, Length=213, Percent_Identity=28.169014084507, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561402, Length=193, Percent_Identity=34.1968911917098, Blast_Score=86, Evalue=7e-17, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=29.296875, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI72000259, Length=215, Percent_Identity=30.2325581395349, Blast_Score=82, Evalue=7e-16, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=29.9212598425197, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562906, Length=229, Percent_Identity=31.8777292576419, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17563726, Length=212, Percent_Identity=27.3584905660377, Blast_Score=77, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=31.6582914572864, Blast_Score=76, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17538480, Length=212, Percent_Identity=31.6037735849057, Blast_Score=76, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562990, Length=199, Percent_Identity=27.6381909547739, Blast_Score=73, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17538486, Length=201, Percent_Identity=30.3482587064677, Blast_Score=73, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17565030, Length=206, Percent_Identity=29.6116504854369, Blast_Score=72, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17562904, Length=220, Percent_Identity=26.3636363636364, Blast_Score=72, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562908, Length=221, Percent_Identity=27.6018099547511, Blast_Score=72, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=30.0492610837438, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=29.9212598425197, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=27.5092936802974, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193204405, Length=222, Percent_Identity=27.4774774774775, Blast_Score=68, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560150, Length=210, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560676, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560220, Length=191, Percent_Identity=27.7486910994764, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17559104, Length=206, Percent_Identity=31.5533980582524, Blast_Score=66, Evalue=6e-11, Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=31.2977099236641, Blast_Score=92, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=263, Percent_Identity=31.9391634980989, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=31.4741035856574, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.5396825396825, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI21355319, Length=201, Percent_Identity=30.8457711442786, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI17737361, Length=212, Percent_Identity=30.188679245283, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI18859837, Length=201, Percent_Identity=29.3532338308458, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24644337, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001303 - InterPro: IPR013454 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short; PF00596 Aldolase_II [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 68487; Mature: 68356
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFAMSPAASAALTDLVRVSRLLGADPALVLHGGGNTSLKATTTDLTGSTVDTLFVKASG CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEECC HDLASIDAAGFAPLRLARLREILPPVVVPDDLLINELRCALLDAAAPDPSVETLLHALLP CCCEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC RPAVIHSHADALLAVANTPDGRERLADLFGDRVILVDYAMPGPDLVAACAAAWSREGGNH CCCEECCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC TQGVVVLGHGLFTVGSTPDEAYQHHVDLVTDVAGLLRASSTRGQSQPAAPLPPADPLAVA CCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH RLRQSLSRAAGHPMVVTSHRDNEVASFVGDDRLLAAAQRGPLTPDHVIWTKHSPMIGTDL HHHHHHHHHCCCCEEEECCCCCHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCH DAFVRAEDDYFTRHATRRGRTLLRLDGAPRVVLDRTLGMLTAGRTAGEAARTADIYRHTL HHHEECCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH GAIELAEALGGYRPVEEEHVFDLEYWSLQQAKLSRKDSHRPLSGQVAVVTGAASGIGHAC HHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHH AVSLLESGASVVGWDVSPSVRDAISSPEWLGLAVDVTDSAAVTEAIQRGVEAFGGVDILV HHHHHHCCCCEEEECCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE VAAGIFPTSANLGEMSMQAWRRAMAVNVDAVADLYGQIHPFLAAGTPYGRVVLIASKNVA EEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCCCCEEEEEECCCCC APGPGAAAYSASKAAVTQLTRVAALEWAPHGIRVNMIHPDAVFDTGLWTPELLEARAEHY CCCCCCHHHCCHHHHHHHHHHHHHHEECCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHH GMTVEQYKRRNLLSTEVTSKAVGDLAVTLAGPAFAATTGAQIPIDGGNERVI CCCHHHHHHCCCHHHHHHHHHHCCEEEEECCCHHEECCCCEEEECCCCCCCC >Mature Secondary Structure PFAMSPAASAALTDLVRVSRLLGADPALVLHGGGNTSLKATTTDLTGSTVDTLFVKASG CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEECC HDLASIDAAGFAPLRLARLREILPPVVVPDDLLINELRCALLDAAAPDPSVETLLHALLP CCCEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC RPAVIHSHADALLAVANTPDGRERLADLFGDRVILVDYAMPGPDLVAACAAAWSREGGNH CCCEECCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC TQGVVVLGHGLFTVGSTPDEAYQHHVDLVTDVAGLLRASSTRGQSQPAAPLPPADPLAVA CCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH RLRQSLSRAAGHPMVVTSHRDNEVASFVGDDRLLAAAQRGPLTPDHVIWTKHSPMIGTDL HHHHHHHHHCCCCEEEECCCCCHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCH DAFVRAEDDYFTRHATRRGRTLLRLDGAPRVVLDRTLGMLTAGRTAGEAARTADIYRHTL HHHEECCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH GAIELAEALGGYRPVEEEHVFDLEYWSLQQAKLSRKDSHRPLSGQVAVVTGAASGIGHAC HHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHH AVSLLESGASVVGWDVSPSVRDAISSPEWLGLAVDVTDSAAVTEAIQRGVEAFGGVDILV HHHHHHCCCCEEEECCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE VAAGIFPTSANLGEMSMQAWRRAMAVNVDAVADLYGQIHPFLAAGTPYGRVVLIASKNVA EEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHCCCCCCCEEEEEECCCCC APGPGAAAYSASKAAVTQLTRVAALEWAPHGIRVNMIHPDAVFDTGLWTPELLEARAEHY CCCCCCHHHCCHHHHHHHHHHHHHHEECCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHH GMTVEQYKRRNLLSTEVTSKAVGDLAVTLAGPAFAATTGAQIPIDGGNERVI CCCHHHHHHCCCHHHHHHHHHHCCEEEEECCCHHEECCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377; 8188684 [H]