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The map label for this gene is ymfC [H]

Identifier: 119714667

GI number: 119714667

Start: 432727

End: 433446

Strand: Reverse

Name: ymfC [H]

Synonym: Noca_0402

Alternate gene names: 119714667

Gene position: 433446-432727 (Counterclockwise)

Preceding gene: 119714673

Following gene: 119714666

Centisome position: 8.69

GC content: 68.06

Gene sequence:

>720_bases
ATGAGGACCCGCAACACACTGGCGTCTCGCATCGCCGAGGACCTCCGCGGCGACCTGTCCGCGGGGACCTACGGCCCTGG
TTCGAGACTGCCTACCGAGGCCCAGCTCAGCGAGAACTTCGGCGTGTCACGCCCGACCGTCCGCGCCGCGTTGCGCGAGC
TCGAGGCGCTGGGGCTGGTGCAGACCCAGCACGGCGTCGGGACGTTCGTGGTCGAGCAGCCGGCGGTCCGCGCCGGGCTG
GAGGGAATGGACTCGATCACGGACTCGATCCGCGCCACCGGGAAGGTCCCGGGCATGGTGTACGCGACCCGGCTGCTGCG
ACCGGTGCTTCCCGAAGAGGCCGCATTCATGGGGGTATCGGGTGATACCGAGGTCCTCGAGCTGCGACGCAAGCTCCTGG
CCGACGGCGAGGTGGTCGCGTACTCCTACGACCTCCTCCCCGCAACGCTGCTCCCGGACGGATTCGACATCCAGACGCTG
GAGGGGTCCCTGTTCGCATTCCTGCGCGGTGTGCTCCGGATCGAGCCCGACCACGGGGTCGCGGAGGTGCATGCGGTGCA
CTCCGACCACGTGGGGTGGGGCGATGAGGCGAAGGCCCACGATCTCTTCGTGCTGCTGAACCAGCTGCACTACGCCGGTG
ACGACCGGTTGATCCTCTACTCGCGCACCTACTTCATCGAGGGCCGCTACTCCTTCACGATCTTCCGCAACCACCGCTGA

Upstream 100 bases:

>100_bases
GATATGACTTAGGCAGTTGTCAACGGATTCGAGTGAACACACGGCCGACGCCGCCCGCTAGGGTCGGCGTGGCGACACGC
GGGGTGAATGGAGAAGCAAG

Downstream 100 bases:

>100_bases
CGCGAGCGCGGCCCCCGCGCCGGGCCGGTGGCGTGCCGCAGGTGCGTCACGGGCCGGGCGATCATGGCGTCTCCACTTGA
CGACCTGGCAACTCATCTCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MRTRNTLASRIAEDLRGDLSAGTYGPGSRLPTEAQLSENFGVSRPTVRAALRELEALGLVQTQHGVGTFVVEQPAVRAGL
EGMDSITDSIRATGKVPGMVYATRLLRPVLPEEAAFMGVSGDTEVLELRRKLLADGEVVAYSYDLLPATLLPDGFDIQTL
EGSLFAFLRGVLRIEPDHGVAEVHAVHSDHVGWGDEAKAHDLFVLLNQLHYAGDDRLILYSRTYFIEGRYSFTIFRNHR

Sequences:

>Translated_239_residues
MRTRNTLASRIAEDLRGDLSAGTYGPGSRLPTEAQLSENFGVSRPTVRAALRELEALGLVQTQHGVGTFVVEQPAVRAGL
EGMDSITDSIRATGKVPGMVYATRLLRPVLPEEAAFMGVSGDTEVLELRRKLLADGEVVAYSYDLLPATLLPDGFDIQTL
EGSLFAFLRGVLRIEPDHGVAEVHAVHSDHVGWGDEAKAHDLFVLLNQLHYAGDDRLILYSRTYFIEGRYSFTIFRNHR
>Mature_239_residues
MRTRNTLASRIAEDLRGDLSAGTYGPGSRLPTEAQLSENFGVSRPTVRAALRELEALGLVQTQHGVGTFVVEQPAVRAGL
EGMDSITDSIRATGKVPGMVYATRLLRPVLPEEAAFMGVSGDTEVLELRRKLLADGEVVAYSYDLLPATLLPDGFDIQTL
EGSLFAFLRGVLRIEPDHGVAEVHAVHSDHVGWGDEAKAHDLFVLLNQLHYAGDDRLILYSRTYFIEGRYSFTIFRNHR

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=234, Percent_Identity=26.4957264957265, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790118, Length=160, Percent_Identity=30, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26306; Mature: 26306

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50949 HTH_GNTR ; PS01266 ADENYLOSUCCIN_SYN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRNTLASRIAEDLRGDLSAGTYGPGSRLPTEAQLSENFGVSRPTVRAALRELEALGLV
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHE
QTQHGVGTFVVEQPAVRAGLEGMDSITDSIRATGKVPGMVYATRLLRPVLPEEAAFMGVS
EECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCC
GDTEVLELRRKLLADGEVVAYSYDLLPATLLPDGFDIQTLEGSLFAFLRGVLRIEPDHGV
CCHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCEEEHHHHHHHHHHHHEEECCCCCC
AEVHAVHSDHVGWGDEAKAHDLFVLLNQLHYAGDDRLILYSRTYFIEGRYSFTIFRNHR
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECEEEEEEEECCC
>Mature Secondary Structure
MRTRNTLASRIAEDLRGDLSAGTYGPGSRLPTEAQLSENFGVSRPTVRAALRELEALGLV
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHE
QTQHGVGTFVVEQPAVRAGLEGMDSITDSIRATGKVPGMVYATRLLRPVLPEEAAFMGVS
EECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCC
GDTEVLELRRKLLADGEVVAYSYDLLPATLLPDGFDIQTLEGSLFAFLRGVLRIEPDHGV
CCHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCEEEHHHHHHHHHHHHEEECCCCCC
AEVHAVHSDHVGWGDEAKAHDLFVLLNQLHYAGDDRLILYSRTYFIEGRYSFTIFRNHR
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]