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The map label for this gene is ccl2 [H]

Identifier: 119386685

GI number: 119386685

Start: 1117495

End: 1117947

Strand: Direct

Name: ccl2 [H]

Synonym: Pden_3978

Alternate gene names: 119386685

Gene position: 1117495-1117947 (Clockwise)

Preceding gene: 119386684

Following gene: 119386686

Centisome position: 64.59

GC content: 69.09

Gene sequence:

>453_bases
ATGCGCGCGCTGATCCTTTGCCTGTCGCTGCTGCTTGCGCTGCCCGCCTTCGCCGTCCAGCCCGACGAGGTGCTGTCCGA
TCCGGCGCTGGAGGCGCGGGCGCGCGAGATTTCCAAGACCCTGCGCTGCCCGGTCTGCCAGGGCGAGACCATCGACGAAT
CGAATGCGGCGATCAGCCGCGACCTGCGGCTCTACCTGCGCGAACGCCTGGTTGCCGGCGACAGCGATACCGAGGCGGTG
CAGGCCATCGCCGACCGTTTCGGCGAATATGTCCTGTTCGAGCCCCCGGCGCGCGGCGCGAACTGGCTGCTCTACCTGGC
CGGGCCGGTCATGGCGTTGCTGGCGCTGCTGGTGGGCTGGCGCTTCGTCCGCTCGCGCAACCTGGCCGAAGAGGGGCCGG
CCAAGCTCAGCGACGAGGAAAAGGCCAGGCTGGAAAGGATCTTGCGCGACTGA

Upstream 100 bases:

>100_bases
GATGGCGCTTGGCGGCTTCATCAGCCTGTCGGACCGGCGCTATCGCGTCGCCGCCGGCGCCCGCCATGCCCGCACCGCAC
CCCAGCCGGCGGAGTAGCCC

Downstream 100 bases:

>100_bases
CGCAGGGTCGGGGCTTTCCTGTCCCGCAGCACCCCGGCAGGATGGCCGAAAGCAGGGGAAGAGGCAGGGATGAGCTTTCA
GACCATCGAAGTCACGCATC

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MRALILCLSLLLALPAFAVQPDEVLSDPALEARAREISKTLRCPVCQGETIDESNAAISRDLRLYLRERLVAGDSDTEAV
QAIADRFGEYVLFEPPARGANWLLYLAGPVMALLALLVGWRFVRSRNLAEEGPAKLSDEEKARLERILRD

Sequences:

>Translated_150_residues
MRALILCLSLLLALPAFAVQPDEVLSDPALEARAREISKTLRCPVCQGETIDESNAAISRDLRLYLRERLVAGDSDTEAV
QAIADRFGEYVLFEPPARGANWLLYLAGPVMALLALLVGWRFVRSRNLAEEGPAKLSDEEKARLERILRD
>Mature_150_residues
MRALILCLSLLLALPAFAVQPDEVLSDPALEARAREISKTLRCPVCQGETIDESNAAISRDLRLYLRERLVAGDSDTEAV
QAIADRFGEYVLFEPPARGANWLLYLAGPVMALLALLVGWRFVRSRNLAEEGPAKLSDEEKARLERILRD

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16676; Mature: 16676

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALILCLSLLLALPAFAVQPDEVLSDPALEARAREISKTLRCPVCQGETIDESNAAISR
CHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
DLRLYLRERLVAGDSDTEAVQAIADRFGEYVLFEPPARGANWLLYLAGPVMALLALLVGW
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
RFVRSRNLAEEGPAKLSDEEKARLERILRD
HHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRALILCLSLLLALPAFAVQPDEVLSDPALEARAREISKTLRCPVCQGETIDESNAAISR
CHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
DLRLYLRERLVAGDSDTEAVQAIADRFGEYVLFEPPARGANWLLYLAGPVMALLALLVGW
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
RFVRSRNLAEEGPAKLSDEEKARLERILRD
HHHHHCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1310666 [H]