Click here to switch to the map view.

The map label for this gene is ccl1 [H]

Identifier: 119386684

GI number: 119386684

Start: 1115530

End: 1117491

Strand: Direct

Name: ccl1 [H]

Synonym: Pden_3977

Alternate gene names: 119386684

Gene position: 1115530-1117491 (Clockwise)

Preceding gene: 119386683

Following gene: 119386685

Centisome position: 64.48

GC content: 67.79

Gene sequence:

>1962_bases
ATGATCGCTGAACTTGGCCATTTCGCACTGATCCTTGCCTTTGCCGTGGCCATCTTCCAGATGATCGTGCCGATGATCGG
CGCCGGCAAGGGCTGGGGCGGCTGGATCGACTCCGCGCGCCCCGCCGCGCTGGCGCAATTCGGGCTGGTCGGCATTTCCT
TCGTCGCGCTGACCATGGCCTTCGTGACCTCGGACTTCTCGGTCGCGCTGGTCTACCAGAACTCGCATACCGCCAAGCCG
ATGATCTACAAGATCAGCGGCGTCTGGGGCAACCACGAGGGCTCGATGCTGCTCTGGGTGCTGATCGTGGCGCTGTTCGG
CGCGATGGCGGCGATATTCGACGCGAACCTGCCGCCCAAGCTGCGGGCGCGGGTTCTGGCGGTGCAGGGCTCGATCGGCG
CGGCGTTCCTGGGCTTCATCCTGTTCACCTCGAACCCCTTCCTGCGCATGGCGAGCCCGCCTTTCGACGGGCGCGACCTG
AACCCGCTCTTGCAGGACCCGGGCCTCGCCTTCCATCCGCCCTTCCTCTACCTCGGCTATGTCGGGCTCAGCATGGCCTT
CAGCTTTGCCGTGGCCGCGCTGATCGAGGGGCGGGTCGACGCCGCCTGGGCGCGCTGGGTCAGGCCATGGACGCTGGCGG
CCTGGGTCTTCCTGACCATCGGCATCGCGCTGGGTTCGTGGTGGGCCTATTACGAGCTGGGCTGGGGCGGCTTCTGGTTC
TGGGATCCGGTGGAAAACGCCAGCTTCATGCCCTGGCTGATCGCCGCCGCGCTCCTGCATTCCGCCATCGTGGTGGAAAA
GCGCGAGGTGCTGAAAAGCTGGACCATCCTGCTGGCGATCATGGCTTTCGGCTTTTCGCTGATCGGCACCTTCATCGTGC
GCTCGGGGGTCATCACCTCGGTCCACAGCTTTGCCAGCGACCCCAAGCGCGGGGTGTTCATCCTGGCGATCCTGGCGTTC
TTCGTCGGCGGCGCGCTGCTGCTTTACACCTTCCGCGCCGCCTCGATGCAGGCGCGAGGCGCCTTCACCCCAGTCTCGCG
CGAGGGGGCGCTGGTGCTCAACAACATCCTGCTGGCGGTCTCGACCTTCGTGGTCTTCATCGGCACCGTCTGGCCCCTGG
TGGCCGAGATGCTGTGGGACCGCAGGCTGTCGGTGGGCGCCCCCTTCTTCGAGCAGGCCTTCACGCCCTTCATGGTGGCG
CTGGCGATCATCCTGCCCGTGGGCGCGATCCTGCCGTGGAAGCGCGGCAAGCTCAAACGCGTGCTGTATCCGCTGCGCGG
CGCGCTGGTCTTTGCCGGGGCGGTGATGGCGCTGGTCTTTGCCGTCTCGACCGGCCATTCGGCGCTGGCGGTGATCGGCG
CCGGGCTGGGTGCCTGGCTGGTTGCGGGCGCGGTCGTGGACCTGTGGCTGCGCACCGGCAACTCCGGCCTGTCCCGCCTG
CGCCGGCTGCCGCGCGCTGATTGGGGCAAGGCCGTGGCCCATGCCGGGCTGGGCGTCACCTTCATCGGCATCAGCCTGCT
GATGGCCTGGCAGGTCGAGGACATCCGCGTGGCCCGCATCGGCGAGACCTTCACCGTCGCCGGCTACGACATCACCCTGG
AAAGCGTGGAAGAGCGCCCCGGCCCGAACTACAACTCGATCACGGCCGCGATGACGGTGGATCGCAACGGGCAGCAGGTT
GCGCTGCTGCATCCCGAAAAGCGGGTCTATCCGGTGCAATCCATGCCCACGACCGAGGCGGCGATCCAGAGCGGCCCGTT
CCGCGACCTCTACCTGGTCATCGGCGACGAACAGCAGGGCGGCGGCTGGGCGGTGCGCGTCTATATCAAGCCCTTCGCCA
GCTGGATCTGGCTGGGCTCGGCGCTGATGGCGCTTGGCGGCTTCATCAGCCTGTCGGACCGGCGCTATCGCGTCGCCGCC
GGCGCCCGCCATGCCCGCACCGCACCCCAGCCGGCGGAGTAG

Upstream 100 bases:

>100_bases
GCTGCGCGCTAGCAATGCTGTGACAATCTGGCAGGCGCGGGGGGCTGGCTTGCCGCCCGCGCCGCGGTTATCCTGCGGGG
CAGCCACCCGGAGGGAGCCC

Downstream 100 bases:

>100_bases
CCCATGCGCGCGCTGATCCTTTGCCTGTCGCTGCTGCTTGCGCTGCCCGCCTTCGCCGTCCAGCCCGACGAGGTGCTGTC
CGATCCGGCGCTGGAGGCGC

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MIAELGHFALILAFAVAIFQMIVPMIGAGKGWGGWIDSARPAALAQFGLVGISFVALTMAFVTSDFSVALVYQNSHTAKP
MIYKISGVWGNHEGSMLLWVLIVALFGAMAAIFDANLPPKLRARVLAVQGSIGAAFLGFILFTSNPFLRMASPPFDGRDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWARWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
WDPVENASFMPWLIAAALLHSAIVVEKREVLKSWTILLAIMAFGFSLIGTFIVRSGVITSVHSFASDPKRGVFILAILAF
FVGGALLLYTFRAASMQARGAFTPVSREGALVLNNILLAVSTFVVFIGTVWPLVAEMLWDRRLSVGAPFFEQAFTPFMVA
LAIILPVGAILPWKRGKLKRVLYPLRGALVFAGAVMALVFAVSTGHSALAVIGAGLGAWLVAGAVVDLWLRTGNSGLSRL
RRLPRADWGKAVAHAGLGVTFIGISLLMAWQVEDIRVARIGETFTVAGYDITLESVEERPGPNYNSITAAMTVDRNGQQV
ALLHPEKRVYPVQSMPTTEAAIQSGPFRDLYLVIGDEQQGGGWAVRVYIKPFASWIWLGSALMALGGFISLSDRRYRVAA
GARHARTAPQPAE

Sequences:

>Translated_653_residues
MIAELGHFALILAFAVAIFQMIVPMIGAGKGWGGWIDSARPAALAQFGLVGISFVALTMAFVTSDFSVALVYQNSHTAKP
MIYKISGVWGNHEGSMLLWVLIVALFGAMAAIFDANLPPKLRARVLAVQGSIGAAFLGFILFTSNPFLRMASPPFDGRDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWARWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
WDPVENASFMPWLIAAALLHSAIVVEKREVLKSWTILLAIMAFGFSLIGTFIVRSGVITSVHSFASDPKRGVFILAILAF
FVGGALLLYTFRAASMQARGAFTPVSREGALVLNNILLAVSTFVVFIGTVWPLVAEMLWDRRLSVGAPFFEQAFTPFMVA
LAIILPVGAILPWKRGKLKRVLYPLRGALVFAGAVMALVFAVSTGHSALAVIGAGLGAWLVAGAVVDLWLRTGNSGLSRL
RRLPRADWGKAVAHAGLGVTFIGISLLMAWQVEDIRVARIGETFTVAGYDITLESVEERPGPNYNSITAAMTVDRNGQQV
ALLHPEKRVYPVQSMPTTEAAIQSGPFRDLYLVIGDEQQGGGWAVRVYIKPFASWIWLGSALMALGGFISLSDRRYRVAA
GARHARTAPQPAE
>Mature_653_residues
MIAELGHFALILAFAVAIFQMIVPMIGAGKGWGGWIDSARPAALAQFGLVGISFVALTMAFVTSDFSVALVYQNSHTAKP
MIYKISGVWGNHEGSMLLWVLIVALFGAMAAIFDANLPPKLRARVLAVQGSIGAAFLGFILFTSNPFLRMASPPFDGRDL
NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWARWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
WDPVENASFMPWLIAAALLHSAIVVEKREVLKSWTILLAIMAFGFSLIGTFIVRSGVITSVHSFASDPKRGVFILAILAF
FVGGALLLYTFRAASMQARGAFTPVSREGALVLNNILLAVSTFVVFIGTVWPLVAEMLWDRRLSVGAPFFEQAFTPFMVA
LAIILPVGAILPWKRGKLKRVLYPLRGALVFAGAVMALVFAVSTGHSALAVIGAGLGAWLVAGAVVDLWLRTGNSGLSRL
RRLPRADWGKAVAHAGLGVTFIGISLLMAWQVEDIRVARIGETFTVAGYDITLESVEERPGPNYNSITAAMTVDRNGQQV
ALLHPEKRVYPVQSMPTTEAAIQSGPFRDLYLVIGDEQQGGGWAVRVYIKPFASWIWLGSALMALGGFISLSDRRYRVAA
GARHARTAPQPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=657, Percent_Identity=45.3576864535769, Blast_Score=532, Evalue=1e-152,
Organism=Escherichia coli, GI1790511, Length=380, Percent_Identity=44.4736842105263, Blast_Score=269, Evalue=4e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70780; Mature: 70780

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAELGHFALILAFAVAIFQMIVPMIGAGKGWGGWIDSARPAALAQFGLVGISFVALTMA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FVTSDFSVALVYQNSHTAKPMIYKISGVWGNHEGSMLLWVLIVALFGAMAAIFDANLPPK
HHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRARVLAVQGSIGAAFLGFILFTSNPFLRMASPPFDGRDLNPLLQDPGLAFHPPFLYLGY
HHHEEEEEECCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCHHHHHHH
VGLSMAFSFAVAALIEGRVDAAWARWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
HHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHEEEEECCCCEEE
WDPVENASFMPWLIAAALLHSAIVVEKREVLKSWTILLAIMAFGFSLIGTFIVRSGVITS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFASDPKRGVFILAILAFFVGGALLLYTFRAASMQARGAFTPVSREGALVLNNILLAV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
STFVVFIGTVWPLVAEMLWDRRLSVGAPFFEQAFTPFMVALAIILPVGAILPWKRGKLKR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VLYPLRGALVFAGAVMALVFAVSTGHSALAVIGAGLGAWLVAGAVVDLWLRTGNSGLSRL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHH
RRLPRADWGKAVAHAGLGVTFIGISLLMAWQVEDIRVARIGETFTVAGYDITLESVEERP
HHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEEHHHHHCCC
GPNYNSITAAMTVDRNGQQVALLHPEKRVYPVQSMPTTEAAIQSGPFRDLYLVIGDEQQG
CCCCCCEEEEEEECCCCCEEEEECCCCCEECCCCCCCHHHHHCCCCCCEEEEEEECCCCC
GGWAVRVYIKPFASWIWLGSALMALGGFISLSDRRYRVAAGARHARTAPQPAE
CCEEEEEEEHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHCCCCCCCCC
>Mature Secondary Structure
MIAELGHFALILAFAVAIFQMIVPMIGAGKGWGGWIDSARPAALAQFGLVGISFVALTMA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FVTSDFSVALVYQNSHTAKPMIYKISGVWGNHEGSMLLWVLIVALFGAMAAIFDANLPPK
HHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRARVLAVQGSIGAAFLGFILFTSNPFLRMASPPFDGRDLNPLLQDPGLAFHPPFLYLGY
HHHEEEEEECCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCHHHHHHH
VGLSMAFSFAVAALIEGRVDAAWARWVRPWTLAAWVFLTIGIALGSWWAYYELGWGGFWF
HHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHEEEEECCCCEEE
WDPVENASFMPWLIAAALLHSAIVVEKREVLKSWTILLAIMAFGFSLIGTFIVRSGVITS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFASDPKRGVFILAILAFFVGGALLLYTFRAASMQARGAFTPVSREGALVLNNILLAV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
STFVVFIGTVWPLVAEMLWDRRLSVGAPFFEQAFTPFMVALAIILPVGAILPWKRGKLKR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VLYPLRGALVFAGAVMALVFAVSTGHSALAVIGAGLGAWLVAGAVVDLWLRTGNSGLSRL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHH
RRLPRADWGKAVAHAGLGVTFIGISLLMAWQVEDIRVARIGETFTVAGYDITLESVEERP
HHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEEHHHHHCCC
GPNYNSITAAMTVDRNGQQVALLHPEKRVYPVQSMPTTEAAIQSGPFRDLYLVIGDEQQG
CCCCCCEEEEEEECCCCCEEEEECCCCCEECCCCCCCHHHHHCCCCCCEEEEEEECCCCC
GGWAVRVYIKPFASWIWLGSALMALGGFISLSDRRYRVAAGARHARTAPQPAE
CCEEEEEEEHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1310666 [H]