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The map label for this gene is yvrC [H]

Identifier: 119356933

GI number: 119356933

Start: 1256908

End: 1257789

Strand: Reverse

Name: yvrC [H]

Synonym: Cpha266_1112

Alternate gene names: 119356933

Gene position: 1257789-1256908 (Counterclockwise)

Preceding gene: 119356963

Following gene: 119356932

Centisome position: 40.13

GC content: 48.64

Gene sequence:

>882_bases
ATGTTCAGCAACCCGACAGGCAAACCGATTTTGCGAATTCTTTCTGTTTTTCTATTTCTTGCCCTCTTTTCCGGATGCAC
GAATCAACAGGAGAGTCCAAAAACAACCGGAAACGTAAAACCAGGCATTGTCAGTCTTGCGCCAAGCGTCACGGAAATGA
TCTATGCTGTAGGTGCCGGTGATCAGCTCATTGGCAGAACTTCAGCATGTGACTGGCCAACGGAAGCCGAAAATGTGCAG
GTGGTGGGAGCGTTCGGCAAACCATCACTTGAAATTCTGGCCGCTCTGCATCCGGATATTGTGCTTGATGTCGATCTTGC
CGACGAACAGAATGGTAAAAAAATCGAGGCACTCGGAATCAGACGTGAGCGCGTCGCCTGCAGTACTCCGGATGATATAG
CACCTGCCCTGAGAAAAATAGGACAACTGACCGGACACCAAAGAGAGGCCGACAGTCTTGCCGATCGTATCACCCAGGGA
CTTCTGACATTCAGAAAAGATGCGGAAAAGGCAACCCGCAAACCTACGGTCTACCTTGAAATCTGGGACGATCCGCTCTG
GACCGGAGGAAAAAACAGCTACACTTCTGCCCTGATCTGGTATGCAGGCGGAAACAATATCGGTGATCAGGTAGAGAAAG
AGTATTTTGAGATCTCTCCGGAATGGGTTGTACAGATGAACCCCGATATCATTGCGTGCATGTATATGTCTAAAAAATTG
TCAGTTGCAGAAACGCTGCGCAAACGTGCCGGATGGAAGTCGATTGATGCCGTAAAAAACAACCGGGTATATGACCGGTT
CGAGAACAGTCTTTTTCTTCGATCAGGTCCGAGGGTACTCGAAGGAATAGAAGAGCTCAAAAAAATCATGCGCTCCGAAT
AG

Upstream 100 bases:

>100_bases
GTTCAGTTCCGTAAAAAGTATCAGCCTCGTTTGGGTTTTTCTCTGCGCAGGTTAATTTAAATCCATAAATCAATCATATT
AATCCGCTTTCAGGATACCG

Downstream 100 bases:

>100_bases
TTGCGCGATTACGGGTTTTTTGAACCCTTGATATCAAAAAAGTCTATGTTTTGTTATCTTGGGAGCTTTAGCGCAATAAT
AGAATCTGCTTGCATGAAGA

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MFSNPTGKPILRILSVFLFLALFSGCTNQQESPKTTGNVKPGIVSLAPSVTEMIYAVGAGDQLIGRTSACDWPTEAENVQ
VVGAFGKPSLEILAALHPDIVLDVDLADEQNGKKIEALGIRRERVACSTPDDIAPALRKIGQLTGHQREADSLADRITQG
LLTFRKDAEKATRKPTVYLEIWDDPLWTGGKNSYTSALIWYAGGNNIGDQVEKEYFEISPEWVVQMNPDIIACMYMSKKL
SVAETLRKRAGWKSIDAVKNNRVYDRFENSLFLRSGPRVLEGIEELKKIMRSE

Sequences:

>Translated_293_residues
MFSNPTGKPILRILSVFLFLALFSGCTNQQESPKTTGNVKPGIVSLAPSVTEMIYAVGAGDQLIGRTSACDWPTEAENVQ
VVGAFGKPSLEILAALHPDIVLDVDLADEQNGKKIEALGIRRERVACSTPDDIAPALRKIGQLTGHQREADSLADRITQG
LLTFRKDAEKATRKPTVYLEIWDDPLWTGGKNSYTSALIWYAGGNNIGDQVEKEYFEISPEWVVQMNPDIIACMYMSKKL
SVAETLRKRAGWKSIDAVKNNRVYDRFENSLFLRSGPRVLEGIEELKKIMRSE
>Mature_293_residues
MFSNPTGKPILRILSVFLFLALFSGCTNQQESPKTTGNVKPGIVSLAPSVTEMIYAVGAGDQLIGRTSACDWPTEAENVQ
VVGAFGKPSLEILAALHPDIVLDVDLADEQNGKKIEALGIRRERVACSTPDDIAPALRKIGQLTGHQREADSLADRITQG
LLTFRKDAEKATRKPTVYLEIWDDPLWTGGKNSYTSALIWYAGGNNIGDQVEKEYFEISPEWVVQMNPDIIACMYMSKKL
SVAETLRKRAGWKSIDAVKNNRVYDRFENSLFLRSGPRVLEGIEELKKIMRSE

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=199, Percent_Identity=28.1407035175879, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 32491; Mature: 32491

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSNPTGKPILRILSVFLFLALFSGCTNQQESPKTTGNVKPGIVSLAPSVTEMIYAVGAG
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCC
DQLIGRTSACDWPTEAENVQVVGAFGKPSLEILAALHPDIVLDVDLADEQNGKKIEALGI
CHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEECC
RRERVACSTPDDIAPALRKIGQLTGHQREADSLADRITQGLLTFRKDAEKATRKPTVYLE
HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IWDDPLWTGGKNSYTSALIWYAGGNNIGDQVEKEYFEISPEWVVQMNPDIIACMYMSKKL
ECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEHHHHHH
SVAETLRKRAGWKSIDAVKNNRVYDRFENSLFLRSGPRVLEGIEELKKIMRSE
HHHHHHHHHCCCCHHHHHHCCCHHHHHCCCEEECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSNPTGKPILRILSVFLFLALFSGCTNQQESPKTTGNVKPGIVSLAPSVTEMIYAVGAG
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCC
DQLIGRTSACDWPTEAENVQVVGAFGKPSLEILAALHPDIVLDVDLADEQNGKKIEALGI
CHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEECC
RRERVACSTPDDIAPALRKIGQLTGHQREADSLADRITQGLLTFRKDAEKATRKPTVYLE
HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IWDDPLWTGGKNSYTSALIWYAGGNNIGDQVEKEYFEISPEWVVQMNPDIIACMYMSKKL
ECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEHHHHHH
SVAETLRKRAGWKSIDAVKNNRVYDRFENSLFLRSGPRVLEGIEELKKIMRSE
HHHHHHHHHCCCCHHHHHHCCCHHHHHCCCEEECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]