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The map label for this gene is cydA [H]

Identifier: 119356535

GI number: 119356535

Start: 800128

End: 801483

Strand: Reverse

Name: cydA [H]

Synonym: Cpha266_0700

Alternate gene names: 119356535

Gene position: 801483-800128 (Counterclockwise)

Preceding gene: 119356536

Following gene: 119356534

Centisome position: 25.57

GC content: 48.08

Gene sequence:

>1356_bases
ATGGACACACTCTTGCTTGCACGGCTTCAATTTGCGATCACCTCCGTCTTCCACTTTTTCTTTGTACCACTAACGCTCGG
TCTCTCTCTGTTTATCGCACTGCTTGAAACCGCATATGTGAAAACCGGCGATGAGAAATTCAAAAAACTCACGAAATTCT
GGGGCAACCTCTTCCTGATCAACTTTGCTGTTGGCGTGGTAACAGGCATCGTCATGGAGTTTCAGTTCGGTATGAACTGG
TCTGAATACTCTCGCTTTGTCGGAGATATTTTCGGCGTCCCGCTTGCCATCGAAGCTCTTCTTGCGTTTTTCATCGAATC
GACCTTTCTCGGCATCTGGGTGTTCGGATGGAACAAACTCCCAAAAACGCTCCATGCCGCATGTTTCTGGCTTGTTGCTA
TTGGCTCGAATCTCTCTGCGCTCTGGATTCTGGTTGCAAACTCTTTTATGCAATCACCTGTCGGATTCAAAATGGCTGCT
GATGGATCGCGTGCCGAAATGACAGACTTTGCTGCACTGCTTTTCAATCCCTATGTATGGAAGCAATTCCCGCATGTGCT
TGCAGGAGGAGTTGTAACTGGCGGATTTCTGATTATCGCCATCAGCTCATGGCATCTTATCAGGGGAACAAACGAACGAA
GCGCATTTGAAGCAGCCATGAAATACGGCACGATCTACGCTTTTATCGGAACCCTACTCGTTACCCTCGCAGGTCACACC
CAAATGCAGGATCTCATAAAAACCCAGCCAATGAAAGTAGCTGCCGCAGAAGCTCTATGGGAAACTGAAAATCCTGCAAG
TTTCTCGCTCTTTACCGTCGGCAACGAAAAAGAGCTGAAAGACGTTTTTGCTATCAGAATTCCCGGCATGCTCTCTTTTT
TGGCATACAACTCATTTGAAGGCGAAGTGAAAGGCATCAAGGATCTCCAGAAAGAGTACGAACAGCAGTACGGACCGGGC
AGTTACATACCCTCGATCATAACGGCATACTGGAGTTTCAGGTTCATGGTTGGAGCGGGAACCCTGATGCTGCTGGTCTC
TTTTCTTGCACTGATCAAGGTACTCAAAGAGAACTACACCTTTTCACCCTTTCTGGGCGCTCTGCTCTTCTGGTCGTTTC
TCCTGCCCTACATAGCAAACTCATCAGGCTGGATTCTTGCTGAAATGGGACGTCAACCATGGATCGTGTTTGGCTTATTG
AAAACAGAAGCGGGCGTCTCACCGGCCTCTGTGGTCAGCAGCGGTGAACTGCTGCTCTCCCTGGTTCTTTTTACCCTGAT
TTATGGAATACTCGCACTGGCAGACCTTTTTCTGCTGAAAAAGTATGCAGCAGCCGGTATTGAAGCTGCTGAATAA

Upstream 100 bases:

>100_bases
AAAGGAACTGATTTTTAACTAACTTGCAGAAACGACGCTATTATTCATTATAATTGTAGTGTTGTATCACCTCAATATAA
CCTTGGCTGCGGAGACCCTT

Downstream 100 bases:

>100_bases
ACCACAAGGAGCAAACAATGGATTTACAAACACTCTGGTTCATCCTGATAACAGTACTCTTTACCGGCTTTTTCTTTCTT
GAAGGCTTTGACTACGGCGT

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MDTLLLARLQFAITSVFHFFFVPLTLGLSLFIALLETAYVKTGDEKFKKLTKFWGNLFLINFAVGVVTGIVMEFQFGMNW
SEYSRFVGDIFGVPLAIEALLAFFIESTFLGIWVFGWNKLPKTLHAACFWLVAIGSNLSALWILVANSFMQSPVGFKMAA
DGSRAEMTDFAALLFNPYVWKQFPHVLAGGVVTGGFLIIAISSWHLIRGTNERSAFEAAMKYGTIYAFIGTLLVTLAGHT
QMQDLIKTQPMKVAAAEALWETENPASFSLFTVGNEKELKDVFAIRIPGMLSFLAYNSFEGEVKGIKDLQKEYEQQYGPG
SYIPSIITAYWSFRFMVGAGTLMLLVSFLALIKVLKENYTFSPFLGALLFWSFLLPYIANSSGWILAEMGRQPWIVFGLL
KTEAGVSPASVVSSGELLLSLVLFTLIYGILALADLFLLKKYAAAGIEAAE

Sequences:

>Translated_451_residues
MDTLLLARLQFAITSVFHFFFVPLTLGLSLFIALLETAYVKTGDEKFKKLTKFWGNLFLINFAVGVVTGIVMEFQFGMNW
SEYSRFVGDIFGVPLAIEALLAFFIESTFLGIWVFGWNKLPKTLHAACFWLVAIGSNLSALWILVANSFMQSPVGFKMAA
DGSRAEMTDFAALLFNPYVWKQFPHVLAGGVVTGGFLIIAISSWHLIRGTNERSAFEAAMKYGTIYAFIGTLLVTLAGHT
QMQDLIKTQPMKVAAAEALWETENPASFSLFTVGNEKELKDVFAIRIPGMLSFLAYNSFEGEVKGIKDLQKEYEQQYGPG
SYIPSIITAYWSFRFMVGAGTLMLLVSFLALIKVLKENYTFSPFLGALLFWSFLLPYIANSSGWILAEMGRQPWIVFGLL
KTEAGVSPASVVSSGELLLSLVLFTLIYGILALADLFLLKKYAAAGIEAAE
>Mature_451_residues
MDTLLLARLQFAITSVFHFFFVPLTLGLSLFIALLETAYVKTGDEKFKKLTKFWGNLFLINFAVGVVTGIVMEFQFGMNW
SEYSRFVGDIFGVPLAIEALLAFFIESTFLGIWVFGWNKLPKTLHAACFWLVAIGSNLSALWILVANSFMQSPVGFKMAA
DGSRAEMTDFAALLFNPYVWKQFPHVLAGGVVTGGFLIIAISSWHLIRGTNERSAFEAAMKYGTIYAFIGTLLVTLAGHT
QMQDLIKTQPMKVAAAEALWETENPASFSLFTVGNEKELKDVFAIRIPGMLSFLAYNSFEGEVKGIKDLQKEYEQQYGPG
SYIPSIITAYWSFRFMVGAGTLMLLVSFLALIKVLKENYTFSPFLGALLFWSFLLPYIANSSGWILAEMGRQPWIVFGLL
KTEAGVSPASVVSSGELLLSLVLFTLIYGILALADLFLLKKYAAAGIEAAE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=510, Percent_Identity=39.6078431372549, Blast_Score=345, Evalue=3e-96,
Organism=Escherichia coli, GI87081779, Length=506, Percent_Identity=38.3399209486166, Blast_Score=337, Evalue=8e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49941; Mature: 49941

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLLLARLQFAITSVFHFFFVPLTLGLSLFIALLETAYVKTGDEKFKKLTKFWGNLFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NFAVGVVTGIVMEFQFGMNWSEYSRFVGDIFGVPLAIEALLAFFIESTFLGIWVFGWNKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEECCHHH
PKTLHAACFWLVAIGSNLSALWILVANSFMQSPVGFKMAADGSRAEMTDFAALLFNPYVW
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCHHH
KQFPHVLAGGVVTGGFLIIAISSWHLIRGTNERSAFEAAMKYGTIYAFIGTLLVTLAGHT
HHHHHHHHCHHHHCCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QMQDLIKTQPMKVAAAEALWETENPASFSLFTVGNEKELKDVFAIRIPGMLSFLAYNSFE
HHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
GEVKGIKDLQKEYEQQYGPGSYIPSIITAYWSFRFMVGAGTLMLLVSFLALIKVLKENYT
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
FSPFLGALLFWSFLLPYIANSSGWILAEMGRQPWIVFGLLKTEAGVSPASVVSSGELLLS
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHH
LVLFTLIYGILALADLFLLKKYAAAGIEAAE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDTLLLARLQFAITSVFHFFFVPLTLGLSLFIALLETAYVKTGDEKFKKLTKFWGNLFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NFAVGVVTGIVMEFQFGMNWSEYSRFVGDIFGVPLAIEALLAFFIESTFLGIWVFGWNKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEECCHHH
PKTLHAACFWLVAIGSNLSALWILVANSFMQSPVGFKMAADGSRAEMTDFAALLFNPYVW
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCHHH
KQFPHVLAGGVVTGGFLIIAISSWHLIRGTNERSAFEAAMKYGTIYAFIGTLLVTLAGHT
HHHHHHHHCHHHHCCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QMQDLIKTQPMKVAAAEALWETENPASFSLFTVGNEKELKDVFAIRIPGMLSFLAYNSFE
HHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
GEVKGIKDLQKEYEQQYGPGSYIPSIITAYWSFRFMVGAGTLMLLVSFLALIKVLKENYT
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
FSPFLGALLFWSFLLPYIANSSGWILAEMGRQPWIVFGLLKTEAGVSPASVVSSGELLLS
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHH
LVLFTLIYGILALADLFLLKKYAAAGIEAAE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]