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The map label for this gene is cydB [H]

Identifier: 119356534

GI number: 119356534

Start: 799097

End: 800110

Strand: Reverse

Name: cydB [H]

Synonym: Cpha266_0699

Alternate gene names: 119356534

Gene position: 800110-799097 (Counterclockwise)

Preceding gene: 119356535

Following gene: 119356533

Centisome position: 25.53

GC content: 47.63

Gene sequence:

>1014_bases
ATGGATTTACAAACACTCTGGTTCATCCTGATAACAGTACTCTTTACCGGCTTTTTCTTTCTTGAAGGCTTTGACTACGG
CGTAGGCATACTGCTGCCATTCATGAGCAAAGATGATCTTGAACGCCGGACAGTAATCAATACTATAGGCCCATTCTGGG
ATGCCAATGAGGTCTGGCTTATAACCGCAGGAGGAGCGATGTTTGCCGCTTTTCCGGAATGGTACGCCACACTTTTCAGC
GGGTTTTATGTTGCCCTCCTGCTCATGCTTGCCGCACTAATATTCAGGGGTGTCGCCTTTGAGTTCCGGAGCAAGCACGA
CAATCCTGCATGGCGCAATTTCTGGGACTGGAGCATTTTCTTCGGAAGTGCCATTCCTGCTGTACTCTGGGGCGTTGCTC
TTTCGAATTTCATTCGGGGAGTACCTATTGACGAATCCATGAACTATGCCGGTGGATTTTTCAATCTTCTTAACCCCTAT
GCCCTGCTTTGCGGCATAACCTCTTTTTTCATCTTCACCCTGCATGGAGCGGTGTTTCTTACCCTTAAAACGACCGGGAC
CCTGCACGCCAAAGCAATGGGATTTGCAAAAATAATATGGGGCCCGGCAACGCTGCTCTCATTTCTGTTCATGATCTATA
CATCAACAGAGACCGATCTATACCAGCATCTCGGCATTAATCCAGGCGTCATCCCGGTATTCAGCGTTCTGGCCCTGCTT
TCGGTTATTTTTATGTTGAAAAAAAATGCTTCGGGCTGGGCTTTTGCCATGACTGGTGCGGCGATAGCATTTTCAACCAT
AACCATTTTCACCGGTCTCTACCCGAGAGTGCTTGTTTCAAGCCTCAAACCAGAATGGAGCCTGACCATCTACAACGCAT
CATCATCAAGCTACACGTTAGGCATCATGAGCATCATTGCCCTGATTTTTGTCCCCATTGTGCTCATCTATCAGGGATGG
AGCTACTGGATATTCCGAAGCAGGGTAACCAAAGATTCCGAGCTGGAATATTAA

Upstream 100 bases:

>100_bases
CCCTGATTTATGGAATACTCGCACTGGCAGACCTTTTTCTGCTGAAAAAGTATGCAGCAGCCGGTATTGAAGCTGCTGAA
TAAACCACAAGGAGCAAACA

Downstream 100 bases:

>100_bases
TCCTTCAACGATCCAGCATCTTCAGGGCACCTCTTGACCATGCATGAAAGTGCCCTGAAAACATCCTCAGCTTAAGAAAC
CTCTTGACATTGATTCCCGG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MDLQTLWFILITVLFTGFFFLEGFDYGVGILLPFMSKDDLERRTVINTIGPFWDANEVWLITAGGAMFAAFPEWYATLFS
GFYVALLLMLAALIFRGVAFEFRSKHDNPAWRNFWDWSIFFGSAIPAVLWGVALSNFIRGVPIDESMNYAGGFFNLLNPY
ALLCGITSFFIFTLHGAVFLTLKTTGTLHAKAMGFAKIIWGPATLLSFLFMIYTSTETDLYQHLGINPGVIPVFSVLALL
SVIFMLKKNASGWAFAMTGAAIAFSTITIFTGLYPRVLVSSLKPEWSLTIYNASSSSYTLGIMSIIALIFVPIVLIYQGW
SYWIFRSRVTKDSELEY

Sequences:

>Translated_337_residues
MDLQTLWFILITVLFTGFFFLEGFDYGVGILLPFMSKDDLERRTVINTIGPFWDANEVWLITAGGAMFAAFPEWYATLFS
GFYVALLLMLAALIFRGVAFEFRSKHDNPAWRNFWDWSIFFGSAIPAVLWGVALSNFIRGVPIDESMNYAGGFFNLLNPY
ALLCGITSFFIFTLHGAVFLTLKTTGTLHAKAMGFAKIIWGPATLLSFLFMIYTSTETDLYQHLGINPGVIPVFSVLALL
SVIFMLKKNASGWAFAMTGAAIAFSTITIFTGLYPRVLVSSLKPEWSLTIYNASSSSYTLGIMSIIALIFVPIVLIYQGW
SYWIFRSRVTKDSELEY
>Mature_337_residues
MDLQTLWFILITVLFTGFFFLEGFDYGVGILLPFMSKDDLERRTVINTIGPFWDANEVWLITAGGAMFAAFPEWYATLFS
GFYVALLLMLAALIFRGVAFEFRSKHDNPAWRNFWDWSIFFGSAIPAVLWGVALSNFIRGVPIDESMNYAGGFFNLLNPY
ALLCGITSFFIFTLHGAVFLTLKTTGTLHAKAMGFAKIIWGPATLLSFLFMIYTSTETDLYQHLGINPGVIPVFSVLALL
SVIFMLKKNASGWAFAMTGAAIAFSTITIFTGLYPRVLVSSLKPEWSLTIYNASSSSYTLGIMSIIALIFVPIVLIYQGW
SYWIFRSRVTKDSELEY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=365, Percent_Identity=38.3561643835616, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1787213, Length=365, Percent_Identity=36.7123287671233, Blast_Score=225, Evalue=4e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37829; Mature: 37829

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQTLWFILITVLFTGFFFLEGFDYGVGILLPFMSKDDLERRTVINTIGPFWDANEVWL
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHCCCCCCCCCEEE
ITAGGAMFAAFPEWYATLFSGFYVALLLMLAALIFRGVAFEFRSKHDNPAWRNFWDWSIF
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
FGSAIPAVLWGVALSNFIRGVPIDESMNYAGGFFNLLNPYALLCGITSFFIFTLHGAVFL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
TLKTTGTLHAKAMGFAKIIWGPATLLSFLFMIYTSTETDLYQHLGINPGVIPVFSVLALL
EEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
SVIFMLKKNASGWAFAMTGAAIAFSTITIFTGLYPRVLVSSLKPEWSLTIYNASSSSYTL
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
GIMSIIALIFVPIVLIYQGWSYWIFRSRVTKDSELEY
HHHHHHHHHHHHHHHHHCCCHHEEHHHHCCCCCCCCC
>Mature Secondary Structure
MDLQTLWFILITVLFTGFFFLEGFDYGVGILLPFMSKDDLERRTVINTIGPFWDANEVWL
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHCCCCCCCCCEEE
ITAGGAMFAAFPEWYATLFSGFYVALLLMLAALIFRGVAFEFRSKHDNPAWRNFWDWSIF
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
FGSAIPAVLWGVALSNFIRGVPIDESMNYAGGFFNLLNPYALLCGITSFFIFTLHGAVFL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
TLKTTGTLHAKAMGFAKIIWGPATLLSFLFMIYTSTETDLYQHLGINPGVIPVFSVLALL
EEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
SVIFMLKKNASGWAFAMTGAAIAFSTITIFTGLYPRVLVSSLKPEWSLTIYNASSSSYTL
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
GIMSIIALIFVPIVLIYQGWSYWIFRSRVTKDSELEY
HHHHHHHHHHHHHHHHHCCCHHEEHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]