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The map label for this gene is dcrA [H]

Identifier: 118581461

GI number: 118581461

Start: 3343893

End: 3345449

Strand: Reverse

Name: dcrA [H]

Synonym: Ppro_3058

Alternate gene names: 118581461

Gene position: 3345449-3343893 (Counterclockwise)

Preceding gene: 118581462

Following gene: 118581460

Centisome position: 83.47

GC content: 62.24

Gene sequence:

>1557_bases
ATGTCCGCTACCGCACGCATCATCCTCTGTAATGCCATTGTCATACTGTTGAGCATTGCAGCAATCAGCATCTTCAACCC
GCGGGGTGACCTCCTGATCAACGGCCTGATCTGTCTGCTGCTCCTGGCGGTCAGCTCAGGCCTGATCGTGCGCTTCAGCC
GCAGCGCCTTCAAGCCGCTCGCCGGGATCATCGCCGCGCTCGAGCGGGCTGCTGGCGGAGACCTGTCGGTTCGCGCCGAG
CTGGGCGGGGGGAGTGAGGCCGTCCGCCTGGCCACCGCCTTCAACACCATGATGACCGACATGAACCAGGCCATGCGGCA
GTTCTTCTCCGTTGCCGATCTGGTGCGTGACTCGGTGGTCATGGTCCGCTCCACGACCGAGGCCATGGCGTCGGCAGCCG
AGGAGGTGGCTATCCAGTCCAGCACCATCGCCACCGCCAGCGAAGAGATGGCAGCCACCTCCGGTGACATCGCCCGCAAC
TGCCTGTATGCAGCGGAAAATGCCCAGAAGGCCACCGAACAGACCCACAGCGGCTCGCAGATCGTCCAGAACAGCGCCCG
CCTGATGGATAACATTGCCAAGCGCGTGAACGAGTCGTCCCATACCGTTGAGGGACTGGGGCAGCGCTCGGACCAGATCG
GCGCCATCGTTAATACCATTCAGGACATAGCGGATCAGACCAACCTGCTGGCGCTGAATGCGGCCATCGAGGCTGCCCGG
GCAGGGGAGCAGGGGCGCGGTTTCGCCGTGGTTGCCGATGAGGTGCGCGCACTGGCCGAGCGGACCACCAAGGCCACCCG
GGAGATCGGCGGCATGATCACGGCTATCCAGGTGGAAACCCAGGCAGCGGTTGACTCCATGGTGGAGGGGGTCGATCAGG
TCGGCCAGGGAACCGAGGAGACCGCCCGCTCTGGCGAGGCTCTGGAGGATATTCTCGGCAGGATCAACGAACTGGCCATG
CAGGTCAGCCAGATCGCCACCGCAGCCGAGGAACAGACCGCCACAACCAGCGAGATTACCCAGAACATCCAGATGATCAC
CAGCGTGGTCGAACGCAATGTGGAAAGCGCCCGCGGCACGACGGTCGCCACAGCCAGGTTGTCGGAACAGGTGGACCGGT
TGCATGAACTGGTGGGGCATTTCCGGCTCTCCAATGCGCTGGAGTGGGATGCCTCCTTTGCCACCGGCATCGGAACCTTC
GACGATGAGCACAAGACGCTGTTCCGGATGGTCAACGACCTGCACGATGCCATGCAGCAGAAGCGGAGCAAGGAGGCCAT
CGGCCAGATCCTGGACGGCCTGGCCGACTACACGGTCAACCATTTCGCCGGAGAGGAGCGGGCCTTCTCCCGTACCGGCT
ATCCCGAAGAGGCGCAGCACCGGGAACTGCACAGGAAGCTGGTGGACCAGGTCGTGGAGTTGCAGGGGCGCTTTCGAGAT
GGTCAGGCCCTTCTTACCCAGGACGTGATTACATTTCTGCAGAACTGGCTGGTCAACCATATCAAAGGTGTTGATAAGAA
ATACGGCCCCCATTTAACCAAGAACGGTGTAACGTGA

Upstream 100 bases:

>100_bases
CGCATAGCGTAACAACCGGATCAGTATCCGGGCGTTATCCTGCGCCGCCGCTTTTTGAGTTGCACCCTGTCTCCAAATCG
TCTTCAGGGAGAGTGCCGAC

Downstream 100 bases:

>100_bases
TTGCAATTATCGATTATGGCATGGGCAACCTCCGCTCCGTGCAGAAGGGCTTTGAAAGGGTCGGCGTCGAGGCGGTTGTT
ACCGATGATCCCCGGCTGAT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MSATARIILCNAIVILLSIAAISIFNPRGDLLINGLICLLLLAVSSGLIVRFSRSAFKPLAGIIAALERAAGGDLSVRAE
LGGGSEAVRLATAFNTMMTDMNQAMRQFFSVADLVRDSVVMVRSTTEAMASAAEEVAIQSSTIATASEEMAATSGDIARN
CLYAAENAQKATEQTHSGSQIVQNSARLMDNIAKRVNESSHTVEGLGQRSDQIGAIVNTIQDIADQTNLLALNAAIEAAR
AGEQGRGFAVVADEVRALAERTTKATREIGGMITAIQVETQAAVDSMVEGVDQVGQGTEETARSGEALEDILGRINELAM
QVSQIATAAEEQTATTSEITQNIQMITSVVERNVESARGTTVATARLSEQVDRLHELVGHFRLSNALEWDASFATGIGTF
DDEHKTLFRMVNDLHDAMQQKRSKEAIGQILDGLADYTVNHFAGEERAFSRTGYPEEAQHRELHRKLVDQVVELQGRFRD
GQALLTQDVITFLQNWLVNHIKGVDKKYGPHLTKNGVT

Sequences:

>Translated_518_residues
MSATARIILCNAIVILLSIAAISIFNPRGDLLINGLICLLLLAVSSGLIVRFSRSAFKPLAGIIAALERAAGGDLSVRAE
LGGGSEAVRLATAFNTMMTDMNQAMRQFFSVADLVRDSVVMVRSTTEAMASAAEEVAIQSSTIATASEEMAATSGDIARN
CLYAAENAQKATEQTHSGSQIVQNSARLMDNIAKRVNESSHTVEGLGQRSDQIGAIVNTIQDIADQTNLLALNAAIEAAR
AGEQGRGFAVVADEVRALAERTTKATREIGGMITAIQVETQAAVDSMVEGVDQVGQGTEETARSGEALEDILGRINELAM
QVSQIATAAEEQTATTSEITQNIQMITSVVERNVESARGTTVATARLSEQVDRLHELVGHFRLSNALEWDASFATGIGTF
DDEHKTLFRMVNDLHDAMQQKRSKEAIGQILDGLADYTVNHFAGEERAFSRTGYPEEAQHRELHRKLVDQVVELQGRFRD
GQALLTQDVITFLQNWLVNHIKGVDKKYGPHLTKNGVT
>Mature_517_residues
SATARIILCNAIVILLSIAAISIFNPRGDLLINGLICLLLLAVSSGLIVRFSRSAFKPLAGIIAALERAAGGDLSVRAEL
GGGSEAVRLATAFNTMMTDMNQAMRQFFSVADLVRDSVVMVRSTTEAMASAAEEVAIQSSTIATASEEMAATSGDIARNC
LYAAENAQKATEQTHSGSQIVQNSARLMDNIAKRVNESSHTVEGLGQRSDQIGAIVNTIQDIADQTNLLALNAAIEAARA
GEQGRGFAVVADEVRALAERTTKATREIGGMITAIQVETQAAVDSMVEGVDQVGQGTEETARSGEALEDILGRINELAMQ
VSQIATAAEEQTATTSEITQNIQMITSVVERNVESARGTTVATARLSEQVDRLHELVGHFRLSNALEWDASFATGIGTFD
DEHKTLFRMVNDLHDAMQQKRSKEAIGQILDGLADYTVNHFAGEERAFSRTGYPEEAQHRELHRKLVDQVVELQGRFRDG
QALLTQDVITFLQNWLVNHIKGVDKKYGPHLTKNGVT

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=355, Percent_Identity=30.1408450704225, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1788194, Length=360, Percent_Identity=31.6666666666667, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI2367378, Length=347, Percent_Identity=30.835734870317, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788195, Length=338, Percent_Identity=31.0650887573964, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789453, Length=264, Percent_Identity=28.7878787878788, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 55823; Mature: 55692

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50885 HAMP ; PS00550 HEMERYTHRINS ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATARIILCNAIVILLSIAAISIFNPRGDLLINGLICLLLLAVSSGLIVRFSRSAFKPL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
AGIIAALERAAGGDLSVRAELGGGSEAVRLATAFNTMMTDMNQAMRQFFSVADLVRDSVV
HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVRSTTEAMASAAEEVAIQSSTIATASEEMAATSGDIARNCLYAAENAQKATEQTHSGSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHH
IVQNSARLMDNIAKRVNESSHTVEGLGQRSDQIGAIVNTIQDIADQTNLLALNAAIEAAR
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
AGEQGRGFAVVADEVRALAERTTKATREIGGMITAIQVETQAAVDSMVEGVDQVGQGTEE
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHH
TARSGEALEDILGRINELAMQVSQIATAAEEQTATTSEITQNIQMITSVVERNVESARGT
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TVATARLSEQVDRLHELVGHFRLSNALEWDASFATGIGTFDDEHKTLFRMVNDLHDAMQQ
HHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KRSKEAIGQILDGLADYTVNHFAGEERAFSRTGYPEEAQHRELHRKLVDQVVELQGRFRD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
GQALLTQDVITFLQNWLVNHIKGVDKKYGPHLTKNGVT
CHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC
>Mature Secondary Structure 
SATARIILCNAIVILLSIAAISIFNPRGDLLINGLICLLLLAVSSGLIVRFSRSAFKPL
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
AGIIAALERAAGGDLSVRAELGGGSEAVRLATAFNTMMTDMNQAMRQFFSVADLVRDSVV
HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVRSTTEAMASAAEEVAIQSSTIATASEEMAATSGDIARNCLYAAENAQKATEQTHSGSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHH
IVQNSARLMDNIAKRVNESSHTVEGLGQRSDQIGAIVNTIQDIADQTNLLALNAAIEAAR
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
AGEQGRGFAVVADEVRALAERTTKATREIGGMITAIQVETQAAVDSMVEGVDQVGQGTEE
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHH
TARSGEALEDILGRINELAMQVSQIATAAEEQTATTSEITQNIQMITSVVERNVESARGT
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TVATARLSEQVDRLHELVGHFRLSNALEWDASFATGIGTFDDEHKTLFRMVNDLHDAMQQ
HHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KRSKEAIGQILDGLADYTVNHFAGEERAFSRTGYPEEAQHRELHRKLVDQVVELQGRFRD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
GQALLTQDVITFLQNWLVNHIKGVDKKYGPHLTKNGVT
CHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]