| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is comEC [H]
Identifier: 118579803
GI number: 118579803
Start: 1465782
End: 1468208
Strand: Direct
Name: comEC [H]
Synonym: Ppro_1379
Alternate gene names: 118579803
Gene position: 1465782-1468208 (Clockwise)
Preceding gene: 118579801
Following gene: 118579804
Centisome position: 36.57
GC content: 66.71
Gene sequence:
>2427_bases GTGGCAGAGGGGAAACATCCGCTGCTGATGCCGTTTCTGGCCCTGTCAACCGGGCTCGTTCTAGGGGACAGGTATGCCCT CTCCCTGCCTGTCTCCGCCGTGGCGGCCGCTTTCCTGGCCCTGCTGCTTTCCTGCTTCGTCCGCCACCGCCTGGTCCAGG GTAGCTGCACGTTCCTCTTCTTCCTCGTCTGGGGCCTGTATGTCCTGCCCCTCTGGACGACGCCCCCGGAAGCGGAGCGT TCCATCCTGAGATACGAGAGGCGGGGGGCGGTGGTCGTCGAAGGGGTGATCCGTTCCCTGCCAATGGTTGCCGGCACTCC CGGCGGATCTTCCACCCGCTTCGTGCTGGAGACGTCCGGCGTCGTCCGCGACGGCCGCCTCGCGCCGGCCAGCGGCAGGC TGATGGTCTACGTACGCTCGGGCGAGGTCAGCCCCGGGCGCGGCGACCTGGTCCGTCTGCTGATGCGCATCTCCACTCCC CACCTGCTGGGCTTGCCGGGGGAATTCGATTTCGGCCGCTATCTTGCCCATCAGGGAATCGTGGCCAGCGCCAGTGTGGC CAGGGCGGATGACCTGCTGCTGATGCGGGGCGGCGTGCAGGACCGGCTTGTGGCCAGCGTCGATCGCCAGGCGCGGTTGA TGGGCGATTTTATCCGCGCCTGTCTGCCGGACCAGCGGGTTTCGTCGGTGGTGGCCGCGCTTCTGATCGGGGACCAGCGG CGCATAGCGGATGATCTCTCCCGCGCCTATACCCGTGCCGGGGTCAGTCATATCCTCTCCATCTCCGGCTTTCATGTGGG GATTCTGGCCTTCGTCGTTGCCCAGGCTGTCCTCCTGATCGCCACCCGCTTTGAAACGCTGGCCCTGCGCTTCAACCTGC GCCGGGTCGCGTTGCTGTCGTCTCTGCCGGCCATGCTGCTCTACCTGCTTCTGACCGGGGTTGCTCCCGCAACTGCCCGT TCGGTGGTCATGCTGGCGCTCTTCGTGCTGGCCCTGTACGTTGAGCGGGAGACCGATCCGGTCAATGCCCTGCTGGTGTC GGCCATGATGCTGGTGGTGGTGAACCCTCCCTCGCTGTTTCATATCTCGTTCCAGCTCTCCTTCCTGGCGCTGTGGGGGA TGGTGCTGCTTGTGCCCCGGATCATGGGACGCTTCGGCTCCATCCGGCGCGGATGGGCGCGGAGCCTGCTGCGCTTCTGC GCCGTTTCCTGCGCCGCGTCCATCGCCACCGTCGTGCCGCTGCTGTACGTCTTTAATCAGGCCTCGCTGAACGGAATCCT GGCCAATTTTCTGGTGGTGCCCCTGCTGGGCTACGGCGCGGTTCTGGCCGGGTTCTGCTCCCTGCTCCTGGTTCCGGTCT GCGCTCCCCTTGCCCGGCTCTTCATGTGGGCTACGGGAAAGCTGGTAGCCGTCTCCAACCGGTTGGTGGAGGAGTTCGCC CGCCTTCCCCTGATCACCTTCGGCGGCATAACCGCCCTGGATATGCTGGCATTTCTGCTGTTCATGGGGCTGGCCACCTT TGTGCGCCCCGGCCGCGTCAGGACGACCCTCTGCCTGCTGACGCCGCTTCTGGCCATCGCGATTCATTTCTCAACGCCTC CCCTGGCCGACGGCCGCCTGCATGTCACCATGCTGAGCGTGGGGCAGGGCGAATCGCTGCTGATCCGTCTTCCCCCGGGG GAGGCCATGCTGGTGGACGGGGGAGGGTTCCCGCCCGACAGCGGCCGGGATTTCGGTGAGCGCATCCTGGGGCCGGCCCT GCTCAGGCTGGGGGTGCGGCGCATCGACTACATGGTCATGACCCACGCCCACCCGGATCACCTGGGCGGTCTCTCCTTCG TGGCCCGGACCCTGCCGGTGGGGCAGTTCTGGGAGCCTGTGCCAGGCGGGGATGGCGGTGCGTACGCCGAGTTGCGGGCC GGTCTGGAATCGCGGGGGATTCCCCGGCGGCTGCTGGCGGCCGGCGACACCCTGCCTCTGCCCGGCGGCGTGACCATGGC GGTGCTCTCTCCCCCGGTTAGCCAGCGGGAACGGCGGGGAGAGACGGACGATGGGGAGATGAATGAACAGTCGCTGGTCT TCCGGCTTACCTATGGAGAGCATTCCTTCCTCTTTACCGCCGATGCCGGCTTTGCCACGGAGCGGCGCATGCTCGGTCAG GGAGTGGAACTGGCAAGCCACCTGCTCAAGGTGGGGCATCACGGCAGCCGCTTCTCCACCTCGGAGGAGTTTCTGGCCCG TGTTTCTCCCAGAATTGCCCTGATTTCAGCGGGCAGCCGCAACGCTTTCGGGCTGCCGTCTCCCCGCACCCTGGCGCTCC TGCGGCGGCGGGGTGTTGCCGTCTACCGCACCGATCTTGACGGCACGGTGGAACTGGTCAGCGATGGAAGGTGCCTGGCC GTCGGCACCCCCTGGCGTCCCAATTGA
Upstream 100 bases:
>100_bases GAAGCATCTCCGACGAACGCTGGAGGCTCGTATGCGAATCTACACACCCATGACCGGCGCCGGTTGGCATGCTTCCGGCA CTGACCGCTGAAGGATGGCC
Downstream 100 bases:
>100_bases TCCGTGCGGCTTAATTGCCGTTTGACAGTGGTTTCATAACGCGGTACTAATACATTCTTGACTGATTTCAAACCCATGGG CAGAGATTGATCGCATGCGC
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 808; Mature: 807
Protein sequence:
>808_residues MAEGKHPLLMPFLALSTGLVLGDRYALSLPVSAVAAAFLALLLSCFVRHRLVQGSCTFLFFLVWGLYVLPLWTTPPEAER SILRYERRGAVVVEGVIRSLPMVAGTPGGSSTRFVLETSGVVRDGRLAPASGRLMVYVRSGEVSPGRGDLVRLLMRISTP HLLGLPGEFDFGRYLAHQGIVASASVARADDLLLMRGGVQDRLVASVDRQARLMGDFIRACLPDQRVSSVVAALLIGDQR RIADDLSRAYTRAGVSHILSISGFHVGILAFVVAQAVLLIATRFETLALRFNLRRVALLSSLPAMLLYLLLTGVAPATAR SVVMLALFVLALYVERETDPVNALLVSAMMLVVVNPPSLFHISFQLSFLALWGMVLLVPRIMGRFGSIRRGWARSLLRFC AVSCAASIATVVPLLYVFNQASLNGILANFLVVPLLGYGAVLAGFCSLLLVPVCAPLARLFMWATGKLVAVSNRLVEEFA RLPLITFGGITALDMLAFLLFMGLATFVRPGRVRTTLCLLTPLLAIAIHFSTPPLADGRLHVTMLSVGQGESLLIRLPPG EAMLVDGGGFPPDSGRDFGERILGPALLRLGVRRIDYMVMTHAHPDHLGGLSFVARTLPVGQFWEPVPGGDGGAYAELRA GLESRGIPRRLLAAGDTLPLPGGVTMAVLSPPVSQRERRGETDDGEMNEQSLVFRLTYGEHSFLFTADAGFATERRMLGQ GVELASHLLKVGHHGSRFSTSEEFLARVSPRIALISAGSRNAFGLPSPRTLALLRRRGVAVYRTDLDGTVELVSDGRCLA VGTPWRPN
Sequences:
>Translated_808_residues MAEGKHPLLMPFLALSTGLVLGDRYALSLPVSAVAAAFLALLLSCFVRHRLVQGSCTFLFFLVWGLYVLPLWTTPPEAER SILRYERRGAVVVEGVIRSLPMVAGTPGGSSTRFVLETSGVVRDGRLAPASGRLMVYVRSGEVSPGRGDLVRLLMRISTP HLLGLPGEFDFGRYLAHQGIVASASVARADDLLLMRGGVQDRLVASVDRQARLMGDFIRACLPDQRVSSVVAALLIGDQR RIADDLSRAYTRAGVSHILSISGFHVGILAFVVAQAVLLIATRFETLALRFNLRRVALLSSLPAMLLYLLLTGVAPATAR SVVMLALFVLALYVERETDPVNALLVSAMMLVVVNPPSLFHISFQLSFLALWGMVLLVPRIMGRFGSIRRGWARSLLRFC AVSCAASIATVVPLLYVFNQASLNGILANFLVVPLLGYGAVLAGFCSLLLVPVCAPLARLFMWATGKLVAVSNRLVEEFA RLPLITFGGITALDMLAFLLFMGLATFVRPGRVRTTLCLLTPLLAIAIHFSTPPLADGRLHVTMLSVGQGESLLIRLPPG EAMLVDGGGFPPDSGRDFGERILGPALLRLGVRRIDYMVMTHAHPDHLGGLSFVARTLPVGQFWEPVPGGDGGAYAELRA GLESRGIPRRLLAAGDTLPLPGGVTMAVLSPPVSQRERRGETDDGEMNEQSLVFRLTYGEHSFLFTADAGFATERRMLGQ GVELASHLLKVGHHGSRFSTSEEFLARVSPRIALISAGSRNAFGLPSPRTLALLRRRGVAVYRTDLDGTVELVSDGRCLA VGTPWRPN >Mature_807_residues AEGKHPLLMPFLALSTGLVLGDRYALSLPVSAVAAAFLALLLSCFVRHRLVQGSCTFLFFLVWGLYVLPLWTTPPEAERS ILRYERRGAVVVEGVIRSLPMVAGTPGGSSTRFVLETSGVVRDGRLAPASGRLMVYVRSGEVSPGRGDLVRLLMRISTPH LLGLPGEFDFGRYLAHQGIVASASVARADDLLLMRGGVQDRLVASVDRQARLMGDFIRACLPDQRVSSVVAALLIGDQRR IADDLSRAYTRAGVSHILSISGFHVGILAFVVAQAVLLIATRFETLALRFNLRRVALLSSLPAMLLYLLLTGVAPATARS VVMLALFVLALYVERETDPVNALLVSAMMLVVVNPPSLFHISFQLSFLALWGMVLLVPRIMGRFGSIRRGWARSLLRFCA VSCAASIATVVPLLYVFNQASLNGILANFLVVPLLGYGAVLAGFCSLLLVPVCAPLARLFMWATGKLVAVSNRLVEEFAR LPLITFGGITALDMLAFLLFMGLATFVRPGRVRTTLCLLTPLLAIAIHFSTPPLADGRLHVTMLSVGQGESLLIRLPPGE AMLVDGGGFPPDSGRDFGERILGPALLRLGVRRIDYMVMTHAHPDHLGGLSFVARTLPVGQFWEPVPGGDGGAYAELRAG LESRGIPRRLLAAGDTLPLPGGVTMAVLSPPVSQRERRGETDDGEMNEQSLVFRLTYGEHSFLFTADAGFATERRMLGQG VELASHLLKVGHHGSRFSTSEEFLARVSPRIALISAGSRNAFGLPSPRTLALLRRRGVAVYRTDLDGTVELVSDGRCLAV GTPWRPN
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=587, Percent_Identity=22.6575809199319, Blast_Score=96, Evalue=8e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 87181; Mature: 87050
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEGKHPLLMPFLALSTGLVLGDRYALSLPVSAVAAAFLALLLSCFVRHRLVQGSCTFLF CCCCCCCHHHHHHHHHCCCEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FLVWGLYVLPLWTTPPEAERSILRYERRGAVVVEGVIRSLPMVAGTPGGSSTRFVLETSG HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCEEEEECCC VVRDGRLAPASGRLMVYVRSGEVSPGRGDLVRLLMRISTPHLLGLPGEFDFGRYLAHQGI CEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHCCC VASASVARADDLLLMRGGVQDRLVASVDRQARLMGDFIRACLPDQRVSSVVAALLIGDQR HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH RIADDLSRAYTRAGVSHILSISGFHVGILAFVVAQAVLLIATRFETLALRFNLRRVALLS HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLPAMLLYLLLTGVAPATARSVVMLALFVLALYVERETDPVNALLVSAMMLVVVNPPSLF HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCEE HISFQLSFLALWGMVLLVPRIMGRFGSIRRGWARSLLRFCAVSCAASIATVVPLLYVFNQ EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLNGILANFLVVPLLGYGAVLAGFCSLLLVPVCAPLARLFMWATGKLVAVSNRLVEEFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH RLPLITFGGITALDMLAFLLFMGLATFVRPGRVRTTLCLLTPLLAIAIHFSTPPLADGRL HCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCEE HVTMLSVGQGESLLIRLPPGEAMLVDGGGFPPDSGRDFGERILGPALLRLGVRRIDYMVM EEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEE THAHPDHLGGLSFVARTLPVGQFWEPVPGGDGGAYAELRAGLESRGIPRRLLAAGDTLPL ECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHCCCCHHHHHCCCCCCC PGGVTMAVLSPPVSQRERRGETDDGEMNEQSLVFRLTYGEHSFLFTADAGFATERRMLGQ CCCCEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHC GVELASHLLKVGHHGSRFSTSEEFLARVSPRIALISAGSRNAFGLPSPRTLALLRRRGVA HHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCE VYRTDLDGTVELVSDGRCLAVGTPWRPN EEEECCCCEEEEECCCCEEEECCCCCCC >Mature Secondary Structure AEGKHPLLMPFLALSTGLVLGDRYALSLPVSAVAAAFLALLLSCFVRHRLVQGSCTFLF CCCCCCHHHHHHHHHCCCEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FLVWGLYVLPLWTTPPEAERSILRYERRGAVVVEGVIRSLPMVAGTPGGSSTRFVLETSG HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCEEEEECCC VVRDGRLAPASGRLMVYVRSGEVSPGRGDLVRLLMRISTPHLLGLPGEFDFGRYLAHQGI CEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHCCC VASASVARADDLLLMRGGVQDRLVASVDRQARLMGDFIRACLPDQRVSSVVAALLIGDQR HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH RIADDLSRAYTRAGVSHILSISGFHVGILAFVVAQAVLLIATRFETLALRFNLRRVALLS HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLPAMLLYLLLTGVAPATARSVVMLALFVLALYVERETDPVNALLVSAMMLVVVNPPSLF HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCEE HISFQLSFLALWGMVLLVPRIMGRFGSIRRGWARSLLRFCAVSCAASIATVVPLLYVFNQ EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLNGILANFLVVPLLGYGAVLAGFCSLLLVPVCAPLARLFMWATGKLVAVSNRLVEEFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH RLPLITFGGITALDMLAFLLFMGLATFVRPGRVRTTLCLLTPLLAIAIHFSTPPLADGRL HCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCEE HVTMLSVGQGESLLIRLPPGEAMLVDGGGFPPDSGRDFGERILGPALLRLGVRRIDYMVM EEEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEE THAHPDHLGGLSFVARTLPVGQFWEPVPGGDGGAYAELRAGLESRGIPRRLLAAGDTLPL ECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHCCCCHHHHHCCCCCCC PGGVTMAVLSPPVSQRERRGETDDGEMNEQSLVFRLTYGEHSFLFTADAGFATERRMLGQ CCCCEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHC GVELASHLLKVGHHGSRFSTSEEFLARVSPRIALISAGSRNAFGLPSPRTLALLRRRGVA HHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCE VYRTDLDGTVELVSDGRCLAVGTPWRPN EEEECCCCEEEEECCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]