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The map label for this gene is nusB

Identifier: 118579723

GI number: 118579723

Start: 1364909

End: 1365340

Strand: Reverse

Name: nusB

Synonym: Ppro_1295

Alternate gene names: 118579723

Gene position: 1365340-1364909 (Counterclockwise)

Preceding gene: 118579724

Following gene: 118579722

Centisome position: 34.07

GC content: 62.04

Gene sequence:

>432_bases
ATGGGACTGCGAAGGGAGTCGCGCGAACTGGCGCTGCAGATGCTCTACGCCCTTGATTCCAACGCATCCGTGGGCCCGCG
GGAGATGCTGCAGATGTTCCGTGAGGAGCAACCGGTTTCCGACCGTCTGCGCCTGTTCGCCGAAGAACTGGTGCAGGGGG
TCCTGGAGCATCGCCCGGCCATCGACGCGGCCATCAAGGCGCGCTCCAAGAACTGGTCGTTAAGCAGGATGCCGAAGGTG
GACCTGAACATCATGCGCCTGGCAACCTATGAGCTGATGTTCCGCGGGGACATCCCCAAGAAGGTCAGCATCAACGAGGC
GATCGAGATCGCCCGCAGGTTCGGCGACAAGGATTCGCCCGCCTTCGTCAACGGCATCCTGGACGAGATACCTTCCTGCG
CAAAGGCGGAGGAACCCGACAGGGAGCAGTAA

Upstream 100 bases:

>100_bases
AGCAGGCCGTTGAACGGGCCGGCACCAAGGCCGGAAACAAGGGATTCGAGGCGGCGGTCACCGTCATCGAGACCGTCAAC
CTGCTGAGGAGCATCAACTA

Downstream 100 bases:

>100_bases
CGCGAAACTAAATTAATGTCTGAGAATCGAGGCTTTCAATGAATGACATCAAAGTTGGCTTGATAGGTTTCGGAAACATT
GGCGCCGGAGTGGTCAAACT

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MGLRRESRELALQMLYALDSNASVGPREMLQMFREEQPVSDRLRLFAEELVQGVLEHRPAIDAAIKARSKNWSLSRMPKV
DLNIMRLATYELMFRGDIPKKVSINEAIEIARRFGDKDSPAFVNGILDEIPSCAKAEEPDREQ

Sequences:

>Translated_143_residues
MGLRRESRELALQMLYALDSNASVGPREMLQMFREEQPVSDRLRLFAEELVQGVLEHRPAIDAAIKARSKNWSLSRMPKV
DLNIMRLATYELMFRGDIPKKVSINEAIEIARRFGDKDSPAFVNGILDEIPSCAKAEEPDREQ
>Mature_142_residues
GLRRESRELALQMLYALDSNASVGPREMLQMFREEQPVSDRLRLFAEELVQGVLEHRPAIDAAIKARSKNWSLSRMPKVD
LNIMRLATYELMFRGDIPKKVSINEAIEIARRFGDKDSPAFVNGILDEIPSCAKAEEPDREQ

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=122, Percent_Identity=39.344262295082, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_PELPD (A1ANJ5)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_900973.1
- ProteinModelPortal:   A1ANJ5
- SMR:   A1ANJ5
- STRING:   A1ANJ5
- GeneID:   4573172
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_1295
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   DINQSAM
- PhylomeDB:   A1ANJ5
- ProtClustDB:   CLSK828489
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16345; Mature: 16214

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRRESRELALQMLYALDSNASVGPREMLQMFREEQPVSDRLRLFAEELVQGVLEHRPA
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH
IDAAIKARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAIEIARRFGDKDSP
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCH
AFVNGILDEIPSCAKAEEPDREQ
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLRRESRELALQMLYALDSNASVGPREMLQMFREEQPVSDRLRLFAEELVQGVLEHRPA
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH
IDAAIKARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAIEIARRFGDKDSP
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCH
AFVNGILDEIPSCAKAEEPDREQ
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA