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The map label for this gene is kdsD [H]

Identifier: 118579405

GI number: 118579405

Start: 1013096

End: 1014061

Strand: Direct

Name: kdsD [H]

Synonym: Ppro_0969

Alternate gene names: 118579405

Gene position: 1013096-1014061 (Clockwise)

Preceding gene: 118579404

Following gene: 118579406

Centisome position: 25.28

GC content: 62.22

Gene sequence:

>966_bases
ATGATTGTTGAAGAGGCTCGTCGTGTTATCCGGGTCGAGGCTGAGGCGCTTCTGGCCATGGCCGAACGGATCAACGGCGC
ATTCGAGCAGGCCGTGCGGATGATTTTGGACTGCACGGGACGGGTGGTGGTGAGCGGCATGGGCAAGTCGGGGCTCGTCG
GACAGAAGATCGCCTCGACCATGGCATCCACCGGCACGCCGGCGCTTTTTCTGCACCCGGCCGAGGGAATCCACGGCGAC
CTGGGCATGATCATGAAAGGCGATGTGGTTATCGCCATCTCCAACAGCGGAGAAACCGAAGAAATGCTGCGCATCCTGCC
GATCATCAAACGCCTGGGCGCCAGGCTGATCGGCATGAGCGGCAATGCCGCCTCAACCCTGGCCCGCGGCAGCGACCTGT
TCCTGGATGTGTCGGTAAAGGAAGAAGCCTGCCCGCTGGGGCTTGCTCCCACCGCATCAACCACGGCAACCCTTGCCATG
GGAGATGCTCTGGCTGTGGCCTTGCTGATCCAGCGCGGCTTTCGCGCCGAGGACTTCGCCCTCTTTCATCCCGGCGGAGC
CCTGGGCAAGAAGCTGTTCCTGCGGGTGGAAGACCTGATGCACTCCGGCGACGAGATTCCCATGGTATCCGCGCAGGCCG
TGATGAGGGACGTTCTGTTCGTCATCAGCGCCAAGCGGCTGGGCGTGACCGGAGTGGCAGGCGATAACGGTGAACTGCGT
GGCGTTATCACCGACGGGGATCTGCGCCGGGCCCTGGAAAAGGGGTACGACATCCTCGAACGGGAGGCCGAAGCGATCAT
GAGGCTCAACCCCAAGAGGATCAGTCGCCATGAACTGGCGGCTGCCGCGCTGCGGCTGATGGAGCAGTACTCCATCACCT
CCCTGTTTGTCTTTGACGACGACACAAGCAGTGTGCCCTGTGGCATCGTTCATCTGCACGACATTCTGCGCTCGGGGATA
GCCTGA

Upstream 100 bases:

>100_bases
CTCCGTCGCCATGGGCGGGGCCGTTGCCTCTGCTTCTGACGGCTCACGGACTTCAGGGGACGGAGGTGTAGTTCATTTAT
GGAAACTGGTGAGGCTGTGT

Downstream 100 bases:

>100_bases
TGCAGGAGAAACTTAAAAAGATCAAACTACTGCTCCTGGATGTGGACGGCGTCATGACCGATGGCGGTATCGTGTTTGAC
GGCAACGGCCTGGAAACCAA

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MIVEEARRVIRVEAEALLAMAERINGAFEQAVRMILDCTGRVVVSGMGKSGLVGQKIASTMASTGTPALFLHPAEGIHGD
LGMIMKGDVVIAISNSGETEEMLRILPIIKRLGARLIGMSGNAASTLARGSDLFLDVSVKEEACPLGLAPTASTTATLAM
GDALAVALLIQRGFRAEDFALFHPGGALGKKLFLRVEDLMHSGDEIPMVSAQAVMRDVLFVISAKRLGVTGVAGDNGELR
GVITDGDLRRALEKGYDILEREAEAIMRLNPKRISRHELAAAALRLMEQYSITSLFVFDDDTSSVPCGIVHLHDILRSGI
A

Sequences:

>Translated_321_residues
MIVEEARRVIRVEAEALLAMAERINGAFEQAVRMILDCTGRVVVSGMGKSGLVGQKIASTMASTGTPALFLHPAEGIHGD
LGMIMKGDVVIAISNSGETEEMLRILPIIKRLGARLIGMSGNAASTLARGSDLFLDVSVKEEACPLGLAPTASTTATLAM
GDALAVALLIQRGFRAEDFALFHPGGALGKKLFLRVEDLMHSGDEIPMVSAQAVMRDVLFVISAKRLGVTGVAGDNGELR
GVITDGDLRRALEKGYDILEREAEAIMRLNPKRISRHELAAAALRLMEQYSITSLFVFDDDTSSVPCGIVHLHDILRSGI
A
>Mature_321_residues
MIVEEARRVIRVEAEALLAMAERINGAFEQAVRMILDCTGRVVVSGMGKSGLVGQKIASTMASTGTPALFLHPAEGIHGD
LGMIMKGDVVIAISNSGETEEMLRILPIIKRLGARLIGMSGNAASTLARGSDLFLDVSVKEEACPLGLAPTASTTATLAM
GDALAVALLIQRGFRAEDFALFHPGGALGKKLFLRVEDLMHSGDEIPMVSAQAVMRDVLFVISAKRLGVTGVAGDNGELR
GVITDGDLRRALEKGYDILEREAEAIMRLNPKRISRHELAAAALRLMEQYSITSLFVFDDDTSSVPCGIVHLHDILRSGI
A

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=317, Percent_Identity=51.1041009463722, Blast_Score=316, Evalue=2e-87,
Organism=Escherichia coli, GI87082151, Length=319, Percent_Identity=41.3793103448276, Blast_Score=229, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34231; Mature: 34231

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVEEARRVIRVEAEALLAMAERINGAFEQAVRMILDCTGRVVVSGMGKSGLVGQKIAST
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
MASTGTPALFLHPAEGIHGDLGMIMKGDVVIAISNSGETEEMLRILPIIKRLGARLIGMS
HHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHEECCC
GNAASTLARGSDLFLDVSVKEEACPLGLAPTASTTATLAMGDALAVALLIQRGFRAEDFA
CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
LFHPGGALGKKLFLRVEDLMHSGDEIPMVSAQAVMRDVLFVISAKRLGVTGVAGDNGELR
EECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEE
GVITDGDLRRALEKGYDILEREAEAIMRLNPKRISRHELAAAALRLMEQYSITSLFVFDD
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
DTSSVPCGIVHLHDILRSGIA
CCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIVEEARRVIRVEAEALLAMAERINGAFEQAVRMILDCTGRVVVSGMGKSGLVGQKIAST
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
MASTGTPALFLHPAEGIHGDLGMIMKGDVVIAISNSGETEEMLRILPIIKRLGARLIGMS
HHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHEECCC
GNAASTLARGSDLFLDVSVKEEACPLGLAPTASTTATLAMGDALAVALLIQRGFRAEDFA
CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
LFHPGGALGKKLFLRVEDLMHSGDEIPMVSAQAVMRDVLFVISAKRLGVTGVAGDNGELR
EECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEE
GVITDGDLRRALEKGYDILEREAEAIMRLNPKRISRHELAAAALRLMEQYSITSLFVFDD
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
DTSSVPCGIVHLHDILRSGIA
CCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]