Click here to switch to the map view.

The map label for this gene is ybdL [C]

Identifier: 118579394

GI number: 118579394

Start: 1001224

End: 1002369

Strand: Direct

Name: ybdL [C]

Synonym: Ppro_0958

Alternate gene names: 118579394

Gene position: 1001224-1002369 (Clockwise)

Preceding gene: 118579393

Following gene: 118579396

Centisome position: 24.98

GC content: 60.82

Gene sequence:

>1146_bases
ATGATCCCGGAACGGGTCGATCGGATGACATCCTTCATCGTCATGGATGTACTTGAAAAAGCTCAGGAGATGGAGCGGGC
AGGGATCGATGTTATCCATCTGGAAGTGGGGGAGCCGGACTTCGGCGTGCCGGAATGCGTCAGCGAGGCGATCAGCCGGG
CGGTTCGTGACGGGCACACCCACTACACCCACAGCCTCGGCATGGTCGAGTTGCGGGAGGCGATCTGCGAGCATTACGGA
AAGAACTACGGTGTGGCGGTTCACCCCGATCAGGTGGTGGTGACCTCCGGCACGTCGCCGGCCATGCTGAGCATGTTCTC
CACACTGCTCGCCAAGGGGGACGAGGTGATCATCTCCGATCCCCACTATGCCTGTTATCCCAACTTCATCCAGTTTCTGG
AGGGGAAGGTGGTCAAGGTGCCGGTGTGCGAGGATGACGGCTTCCAATACCGCCCCGAGGCCATCCGCGACAGGATCACG
GAGAGGACCAGGGCGATCCTGATCAACTCCCCCAGCAACCCCACCGGCACGGTGCTGTCGGCGGAGCGCATGTGGGCCAT
TGCCCAGTTGGGGCCGTACTGCATTTCCGACGAAATCTACCATGGGCTGAACTACCATGGCAGCGAGCATACCATCCTGG
AGTTCACCGACCATGCCTTTGTGCTGAACGGTTTCTCCAAGATCTTCGCCATGACCGGCCTGCGCCTGGGGTACCTTATC
GCTCCCCCCTGCTTCATTCGCCCCCTGCAGAAGCTTCAGCAGAACTTCTTTCTGGCGCCCAACTCGGTCGCCCAGATCGG
CGGCATCGCCGCGCTGAAGGAAGCCGATGCCGATGTGCTCAGGATGAGGAATACCTACGACCAGCGCCGGCGCTTTATGA
TCCAGCGCCTGAGGGACATCGGCTTCGGCATTCCGGTGGAGCCGACCGGCGCCTTTTACGTGTTCGCAAACGCCAAACAT
CTCTCCGGCGACTCCTACGCCCTTGCCTACGACATCCTGGAAAAGGCCCGCGTGGGGGTGACCCCCGGCATCGATTTTGG
CCAGGGGGGAGAGGGGTACCTGCGCTTCACCTATGCCAATTCCCTGGAAAATATCGCCGAAGGGTTAAGTCGGCTGGAGC
GCTACGTGGCTGAGAGGACGTGCTGA

Upstream 100 bases:

>100_bases
TCCTTTCGCGCGGACGAAAGATTCCTGGTGCGCTCTCTCCGACAGCCCCCAACTGCCGTTTCCAGGATGAATACACTTTG
AGCAGAGCGAGGAGAGAGGC

Downstream 100 bases:

>100_bases
CGGGGTGAGTCGAAGAGGCGCCGGGCATTACCTGGGCGCCGAATGACCCGGTGATCAGCGCATCCTGCCCCCGGTTATTG
TTTCTGCGTGCCGGCAGTGT

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MIPERVDRMTSFIVMDVLEKAQEMERAGIDVIHLEVGEPDFGVPECVSEAISRAVRDGHTHYTHSLGMVELREAICEHYG
KNYGVAVHPDQVVVTSGTSPAMLSMFSTLLAKGDEVIISDPHYACYPNFIQFLEGKVVKVPVCEDDGFQYRPEAIRDRIT
ERTRAILINSPSNPTGTVLSAERMWAIAQLGPYCISDEIYHGLNYHGSEHTILEFTDHAFVLNGFSKIFAMTGLRLGYLI
APPCFIRPLQKLQQNFFLAPNSVAQIGGIAALKEADADVLRMRNTYDQRRRFMIQRLRDIGFGIPVEPTGAFYVFANAKH
LSGDSYALAYDILEKARVGVTPGIDFGQGGEGYLRFTYANSLENIAEGLSRLERYVAERTC

Sequences:

>Translated_381_residues
MIPERVDRMTSFIVMDVLEKAQEMERAGIDVIHLEVGEPDFGVPECVSEAISRAVRDGHTHYTHSLGMVELREAICEHYG
KNYGVAVHPDQVVVTSGTSPAMLSMFSTLLAKGDEVIISDPHYACYPNFIQFLEGKVVKVPVCEDDGFQYRPEAIRDRIT
ERTRAILINSPSNPTGTVLSAERMWAIAQLGPYCISDEIYHGLNYHGSEHTILEFTDHAFVLNGFSKIFAMTGLRLGYLI
APPCFIRPLQKLQQNFFLAPNSVAQIGGIAALKEADADVLRMRNTYDQRRRFMIQRLRDIGFGIPVEPTGAFYVFANAKH
LSGDSYALAYDILEKARVGVTPGIDFGQGGEGYLRFTYANSLENIAEGLSRLERYVAERTC
>Mature_381_residues
MIPERVDRMTSFIVMDVLEKAQEMERAGIDVIHLEVGEPDFGVPECVSEAISRAVRDGHTHYTHSLGMVELREAICEHYG
KNYGVAVHPDQVVVTSGTSPAMLSMFSTLLAKGDEVIISDPHYACYPNFIQFLEGKVVKVPVCEDDGFQYRPEAIRDRIT
ERTRAILINSPSNPTGTVLSAERMWAIAQLGPYCISDEIYHGLNYHGSEHTILEFTDHAFVLNGFSKIFAMTGLRLGYLI
APPCFIRPLQKLQQNFFLAPNSVAQIGGIAALKEADADVLRMRNTYDQRRRFMIQRLRDIGFGIPVEPTGAFYVFANAKH
LSGDSYALAYDILEKARVGVTPGIDFGQGGEGYLRFTYANSLENIAEGLSRLERYVAERTC

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=317, Percent_Identity=26.4984227129338, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI169881279, Length=317, Percent_Identity=26.4984227129338, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI56713256, Length=320, Percent_Identity=27.1875, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI56713254, Length=320, Percent_Identity=27.1875, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI169881281, Length=228, Percent_Identity=24.1228070175439, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1786816, Length=333, Percent_Identity=27.6276276276276, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788722, Length=379, Percent_Identity=25.5936675461741, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788627, Length=386, Percent_Identity=27.2020725388601, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788332, Length=259, Percent_Identity=24.7104247104247, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567369, Length=320, Percent_Identity=25.625, Blast_Score=98, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71994476, Length=329, Percent_Identity=24.9240121580547, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71994472, Length=372, Percent_Identity=23.3870967741935, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17567663, Length=373, Percent_Identity=25.4691689008043, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322401, Length=407, Percent_Identity=23.5872235872236, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28573069, Length=387, Percent_Identity=24.5478036175711, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24646114, Length=387, Percent_Identity=24.5478036175711, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28573067, Length=387, Percent_Identity=24.5478036175711, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28573065, Length=387, Percent_Identity=24.5478036175711, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI18859735, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42541; Mature: 42541

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPERVDRMTSFIVMDVLEKAQEMERAGIDVIHLEVGEPDFGVPECVSEAISRAVRDGHT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
HYTHSLGMVELREAICEHYGKNYGVAVHPDQVVVTSGTSPAMLSMFSTLLAKGDEVIISD
HHHHCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEC
PHYACYPNFIQFLEGKVVKVPVCEDDGFQYRPEAIRDRITERTRAILINSPSNPTGTVLS
CCCCCCHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCEEE
AERMWAIAQLGPYCISDEIYHGLNYHGSEHTILEFTDHAFVLNGFSKIFAMTGLRLGYLI
HHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHH
APPCFIRPLQKLQQNFFLAPNSVAQIGGIAALKEADADVLRMRNTYDQRRRFMIQRLRDI
CCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
GFGIPVEPTGAFYVFANAKHLSGDSYALAYDILEKARVGVTPGIDFGQGGEGYLRFTYAN
CCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHH
SLENIAEGLSRLERYVAERTC
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIPERVDRMTSFIVMDVLEKAQEMERAGIDVIHLEVGEPDFGVPECVSEAISRAVRDGHT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
HYTHSLGMVELREAICEHYGKNYGVAVHPDQVVVTSGTSPAMLSMFSTLLAKGDEVIISD
HHHHCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEC
PHYACYPNFIQFLEGKVVKVPVCEDDGFQYRPEAIRDRITERTRAILINSPSNPTGTVLS
CCCCCCHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCEEE
AERMWAIAQLGPYCISDEIYHGLNYHGSEHTILEFTDHAFVLNGFSKIFAMTGLRLGYLI
HHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHH
APPCFIRPLQKLQQNFFLAPNSVAQIGGIAALKEADADVLRMRNTYDQRRRFMIQRLRDI
CCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
GFGIPVEPTGAFYVFANAKHLSGDSYALAYDILEKARVGVTPGIDFGQGGEGYLRFTYAN
CCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHH
SLENIAEGLSRLERYVAERTC
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]