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The map label for this gene is atpH1

Identifier: 118579042

GI number: 118579042

Start: 638507

End: 639049

Strand: Direct

Name: atpH1

Synonym: Ppro_0603

Alternate gene names: 118579042

Gene position: 638507-639049 (Clockwise)

Preceding gene: 118579041

Following gene: 118579043

Centisome position: 15.93

GC content: 54.14

Gene sequence:

>543_bases
ATGATCAATTCCACGATAGCAAAACGATATGCGTTGTCGCTTGTGCAACTTGGGGCGGAATGCGGGCTGGTTGACCGCTT
CCGCGGGGAGCTTGCAGACGTTGAGGATCTTTTTGGCACTACCCCCGAGATTCCGGCCGCCTTCGCGGATCCGGCCCTGA
GCCATGAACGGAAAAAGAACATCATGCGGGAGTTGGTCGGCTCATGCGCCTGTTCCGAACTGATGGGAAACTTCCTGCTG
CTGCTGGTGGACAAGAACCGCGTTGCGTTTTTCAGCCAGATAGTCAAGGCCTATGGGCAGTTGGCTGACGAGCACGTGGG
CATACTTCGCCCGGTTATCACAACCGCCTTTGAGTTGGATGCTGTTCAGTTGGCCGCGATACGGGAGGCGCTGGAAAAAA
AGAGCGCTAAAACGATTATCCCCCAACTGACGGTTGACAAGGCTTTTCTGGGCGGTGTTGTCGTTCAGATCGGTGATACG
GTCTACGACAGCAGTGTAAAGACGCAACTCAAGCGGATACAAGATCAATTACAGAAGGGGTAA

Upstream 100 bases:

>100_bases
TGGCGGTTCAGCTTGCAGCTACGAAACTGGCTGGCGCCATTGGCAAGGAAGACCACGACCTGTACGTGGATGATTATCTC
AAGAAGGTGGAACAGTTCAA

Downstream 100 bases:

>100_bases
TGCTCCCATGAAAATCAGAGCGGAAGAGATCAGCGAGATCATCAAGAAACAGATCAGAGAGTACGGCAAGGAGGTCGAGG
TCTCGGAGACCGGCACGATC

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MINSTIAKRYALSLVQLGAECGLVDRFRGELADVEDLFGTTPEIPAAFADPALSHERKKNIMRELVGSCACSELMGNFLL
LLVDKNRVAFFSQIVKAYGQLADEHVGILRPVITTAFELDAVQLAAIREALEKKSAKTIIPQLTVDKAFLGGVVVQIGDT
VYDSSVKTQLKRIQDQLQKG

Sequences:

>Translated_180_residues
MINSTIAKRYALSLVQLGAECGLVDRFRGELADVEDLFGTTPEIPAAFADPALSHERKKNIMRELVGSCACSELMGNFLL
LLVDKNRVAFFSQIVKAYGQLADEHVGILRPVITTAFELDAVQLAAIREALEKKSAKTIIPQLTVDKAFLGGVVVQIGDT
VYDSSVKTQLKRIQDQLQKG
>Mature_180_residues
MINSTIAKRYALSLVQLGAECGLVDRFRGELADVEDLFGTTPEIPAAFADPALSHERKKNIMRELVGSCACSELMGNFLL
LLVDKNRVAFFSQIVKAYGQLADEHVGILRPVITTAFELDAVQLAAIREALEKKSAKTIIPQLTVDKAFLGGVVVQIGDT
VYDSSVKTQLKRIQDQLQKG

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Caenorhabditis elegans, GI71984710, Length=171, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71984717, Length=171, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320504, Length=174, Percent_Identity=26.4367816091954, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_PELPD (A1ALL4)

Other databases:

- EMBL:   CP000482
- EMBL:   CP000482
- RefSeq:   YP_900292.1
- RefSeq:   YP_901177.1
- ProteinModelPortal:   A1ALL4
- STRING:   A1ALL4
- GeneID:   4572179
- GeneID:   4572384
- GenomeReviews:   CP000482_GR
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_0603
- KEGG:   ppd:Ppro_1504
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   STVYDGS
- PhylomeDB:   A1ALL4
- ProtClustDB:   PRK13429
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19678; Mature: 19678

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSTIAKRYALSLVQLGAECGLVDRFRGELADVEDLFGTTPEIPAAFADPALSHERKKN
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHH
IMRELVGSCACSELMGNFLLLLVDKNRVAFFSQIVKAYGQLADEHVGILRPVITTAFELD
HHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQLAAIREALEKKSAKTIIPQLTVDKAFLGGVVVQIGDTVYDSSVKTQLKRIQDQLQKG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINSTIAKRYALSLVQLGAECGLVDRFRGELADVEDLFGTTPEIPAAFADPALSHERKKN
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHH
IMRELVGSCACSELMGNFLLLLVDKNRVAFFSQIVKAYGQLADEHVGILRPVITTAFELD
HHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQLAAIREALEKKSAKTIIPQLTVDKAFLGGVVVQIGDTVYDSSVKTQLKRIQDQLQKG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA