Click here to switch to the map view.

The map label for this gene is ycjC [C]

Identifier: 118578963

GI number: 118578963

Start: 556899

End: 557462

Strand: Reverse

Name: ycjC [C]

Synonym: Ppro_0524

Alternate gene names: 118578963

Gene position: 557462-556899 (Counterclockwise)

Preceding gene: 118578964

Following gene: 118578962

Centisome position: 13.91

GC content: 54.96

Gene sequence:

>564_bases
ATGAGCGGCTTGAATATTGGTGCAAAAATCAAAAAACTTCGCCAGGAAAAGAAACTCACCCTGCAGGCGGTGGCCAAGGA
GATCGGCTTTTCGCCGGCCCTGATATCCCAGATCGAGAACAACAACGTCTCACCCCCCATCGCCACACTCTCCAAGATAG
CCAAATTCTTCGATGTCAAAATCGGCTACTTCTTCATCGAGGACGACGACGAGTGCGGCTTTGAAATCGTGCACGCCAAC
CAGCGCAAATCGGTTTCCAAGGTCTTCGCCCCCATCGGGACCAGCCACGGCTATTCCTACCAGTCCCTCTCCTTCCGGAA
GCAGAACAAGAAGATGGAACCCTTCTTCCTGACCGTGACCGAAAAGGCCAACGAGGAGAGCGCCTACAGCCATGACGGCG
AAAAGTTCCTCTTCGTCACCAAGGGGGACGTGGAGCTGATACTGGACGACAAGAGCATCTCGCTCTCCGAGGGGGACAGC
ATCTATTTCGACTCGTCAATCAAACACCGCCTGCGTTCGCGGGACGGTAAAGAGGTCAACCTGCTGACGGTCGTCACGCG
CTGA

Upstream 100 bases:

>100_bases
ATTGACTTACAATTCTGTATACAATATACATAGTCAATAGTGCATACTGTATACAATCCATATAATACAACTCGGTTTTA
TTTTAAAAACAGGTGACCAC

Downstream 100 bases:

>100_bases
ACGATCCACTCATCCATTCACACATCCCGATCCCCCTTCGAGTCCACCGCGAAGGGGGTTTTTCGTTGCCGGGCCAGCAG
GGCCACAGCTGGCGAAAGCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulator Merr Family; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Protein; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Cupin Domain Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Cupin 2 Barrel Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Cro/CI Family Protein; Transcription Regulator; XRE Family-Like Protein

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVKIGYFFIEDDDECGFEIVHAN
QRKSVSKVFAPIGTSHGYSYQSLSFRKQNKKMEPFFLTVTEKANEESAYSHDGEKFLFVTKGDVELILDDKSISLSEGDS
IYFDSSIKHRLRSRDGKEVNLLTVVTR

Sequences:

>Translated_187_residues
MSGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVKIGYFFIEDDDECGFEIVHAN
QRKSVSKVFAPIGTSHGYSYQSLSFRKQNKKMEPFFLTVTEKANEESAYSHDGEKFLFVTKGDVELILDDKSISLSEGDS
IYFDSSIKHRLRSRDGKEVNLLTVVTR
>Mature_186_residues
SGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVKIGYFFIEDDDECGFEIVHANQ
RKSVSKVFAPIGTSHGYSYQSLSFRKQNKKMEPFFLTVTEKANEESAYSHDGEKFLFVTKGDVELILDDKSISLSEGDSI
YFDSSIKHRLRSRDGKEVNLLTVVTR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21032; Mature: 20901

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHEEE
IGYFFIEDDDECGFEIVHANQRKSVSKVFAPIGTSHGYSYQSLSFRKQNKKMEPFFLTVT
EEEEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEEEE
EKANEESAYSHDGEKFLFVTKGDVELILDDKSISLSEGDSIYFDSSIKHRLRSRDGKEVN
CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEECCCCCEEEECHHHHHHHHCCCCCEEE
LLTVVTR
EEEEEEC
>Mature Secondary Structure 
SGLNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHEEE
IGYFFIEDDDECGFEIVHANQRKSVSKVFAPIGTSHGYSYQSLSFRKQNKKMEPFFLTVT
EEEEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCEEEEEE
EKANEESAYSHDGEKFLFVTKGDVELILDDKSISLSEGDSIYFDSSIKHRLRSRDGKEVN
CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEECCCCCEEEECHHHHHHHHCCCCCEEE
LLTVVTR
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA