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The map label for this gene is lpsJ [H]

Identifier: 117921905

GI number: 117921905

Start: 4158564

End: 4159226

Strand: Direct

Name: lpsJ [H]

Synonym: Shewana3_3468

Alternate gene names: 117921905

Gene position: 4158564-4159226 (Clockwise)

Preceding gene: 117921904

Following gene: 117921907

Centisome position: 83.64

GC content: 52.64

Gene sequence:

>663_bases
ATGGCACTTTCAAGAGAACAACTCGCCCAGCGCGTCGCCCAAGAACTCAAAGATGGCTATTACGTGAATCTCGGCATTGG
TATCCCCACACTGGTGGCCAACTATATTCCCGAAGGCATTGAAGTGATGCTGCAATCCGAAAATGGCCTGTTAGGGATGG
GGCCTTTTCCGACCATGGAAGAGGTCGATGCCGACTTAATCAATGCAGGAAAACAAACCGTGACTATGGCAAGGGGCGCC
GCCCTCTTCGACTCGGCCGAGTCCTTTGCGATGATCCGCGGCGGCCATGTGGATCTCACCGTATTAGGCGCCTTTGAGGT
CGACACTCAGGGCAATATTGCCTCCTATATGATCCCTGGGAAACTGATTAAGGGCATGGGCGGCGCCATGGATCTTGTCG
CCGGCGCCGACAATATTATTGTGACCATGACCCACGCCTCAAAGCACGGTGAATCCAAGCTATTAACCGAGTGCACCCTG
CCGCTAACGGGTAAGGGCTGTATCAAAAAAGTGCTGACAGACTTGGCCTTTATCGAAATCAAAGAAGGCAAGTTTCATCT
ACTCGAACGTGCGCCCGGCGTGAGTGTCGAGGAGATTATCAAGCTCACCGCAGGCGAATTGGTGGTACCTGAGCATGTCC
CCGAGATGATGTTTAACGAATAA

Upstream 100 bases:

>100_bases
CCATACGCCCGGCATCTATGTCGATCGGCTTATCCAAGGCAGCTTTGAGAAACGTATTGAACAACTAACCACCCGCCCCT
CCAGCAAATAGGATTTGGTT

Downstream 100 bases:

>100_bases
GCGCCATTAAATAGTAGGTTCAAGTGCGCATTCAAATATGCCTTTTCAAATCGCCAATAAAAAAGCAGGGATATCTTAGG
TATCCCTGTTTTTTACGCTA

Product: butyryl-CoA:acetate CoA transferase

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MALSREQLAQRVAQELKDGYYVNLGIGIPTLVANYIPEGIEVMLQSENGLLGMGPFPTMEEVDADLINAGKQTVTMARGA
ALFDSAESFAMIRGGHVDLTVLGAFEVDTQGNIASYMIPGKLIKGMGGAMDLVAGADNIIVTMTHASKHGESKLLTECTL
PLTGKGCIKKVLTDLAFIEIKEGKFHLLERAPGVSVEEIIKLTAGELVVPEHVPEMMFNE

Sequences:

>Translated_220_residues
MALSREQLAQRVAQELKDGYYVNLGIGIPTLVANYIPEGIEVMLQSENGLLGMGPFPTMEEVDADLINAGKQTVTMARGA
ALFDSAESFAMIRGGHVDLTVLGAFEVDTQGNIASYMIPGKLIKGMGGAMDLVAGADNIIVTMTHASKHGESKLLTECTL
PLTGKGCIKKVLTDLAFIEIKEGKFHLLERAPGVSVEEIIKLTAGELVVPEHVPEMMFNE
>Mature_219_residues
ALSREQLAQRVAQELKDGYYVNLGIGIPTLVANYIPEGIEVMLQSENGLLGMGPFPTMEEVDADLINAGKQTVTMARGAA
LFDSAESFAMIRGGHVDLTVLGAFEVDTQGNIASYMIPGKLIKGMGGAMDLVAGADNIIVTMTHASKHGESKLLTECTLP
LTGKGCIKKVLTDLAFIEIKEGKFHLLERAPGVSVEEIIKLTAGELVVPEHVPEMMFNE

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=213, Percent_Identity=52.112676056338, Blast_Score=228, Evalue=4e-60,
Organism=Homo sapiens, GI11545841, Length=215, Percent_Identity=49.3023255813954, Blast_Score=216, Evalue=2e-56,
Organism=Escherichia coli, GI1788552, Length=196, Percent_Identity=50.5102040816327, Blast_Score=213, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17531517, Length=215, Percent_Identity=53.0232558139535, Blast_Score=226, Evalue=1e-59,
Organism=Drosophila melanogaster, GI21358325, Length=214, Percent_Identity=54.6728971962617, Blast_Score=241, Evalue=3e-64,
Organism=Drosophila melanogaster, GI24655794, Length=214, Percent_Identity=54.6728971962617, Blast_Score=241, Evalue=4e-64,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 23560; Mature: 23429

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSREQLAQRVAQELKDGYYVNLGIGIPTLVANYIPEGIEVMLQSENGLLGMGPFPTME
CCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCHH
EVDADLINAGKQTVTMARGAALFDSAESFAMIRGGHVDLTVLGAFEVDTQGNIASYMIPG
HHHHHHHHCCCHHHHHHHCHHHHHCCHHEEEEECCCEEEEEEEEEEECCCCCEEEEECCH
KLIKGMGGAMDLVAGADNIIVTMTHASKHGESKLLTECTLPLTGKGCIKKVLTDLAFIEI
HHHHCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHEECCCCCCHHHHHHHHHHHHEEEE
KEGKFHLLERAPGVSVEEIIKLTAGELVVPEHVPEMMFNE
CCCCEEEECCCCCCCHHHHHHHHCCCEECCHHHHHHHCCC
>Mature Secondary Structure 
ALSREQLAQRVAQELKDGYYVNLGIGIPTLVANYIPEGIEVMLQSENGLLGMGPFPTME
CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCHH
EVDADLINAGKQTVTMARGAALFDSAESFAMIRGGHVDLTVLGAFEVDTQGNIASYMIPG
HHHHHHHHCCCHHHHHHHCHHHHHCCHHEEEEECCCEEEEEEEEEEECCCCCEEEEECCH
KLIKGMGGAMDLVAGADNIIVTMTHASKHGESKLLTECTLPLTGKGCIKKVLTDLAFIEI
HHHHCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHEECCCCCCHHHHHHHHHHHHEEEE
KEGKFHLLERAPGVSVEEIIKLTAGELVVPEHVPEMMFNE
CCCCEEEECCCCCCCHHHHHHHHCCCEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]