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The map label for this gene is ywbI [H]

Identifier: 117921872

GI number: 117921872

Start: 4111011

End: 4111898

Strand: Direct

Name: ywbI [H]

Synonym: Shewana3_3435

Alternate gene names: 117921872

Gene position: 4111011-4111898 (Clockwise)

Preceding gene: 117921870

Following gene: 117921876

Centisome position: 82.68

GC content: 50.23

Gene sequence:

>888_bases
ATGAATATCCCAATCAAGACCTTGCAATGTTTTCTGACCTTAGTCGAAACGGAAAACTTCACCCGTGCCGCGGAAAAATG
CTTTATCACCCAGCCCACGCTGAGCAAGATCATCCAAAGGCTCGAAGAGAGTTTAGGCGAGACGCTGCTTATCCGTAACA
ATCAGAAAGTCGAGCTGACCCAAGCAGGGCAGCTGTTTGAACACAGCGCGCGGGAAATCCTCGGGCAATGGCATAGATTG
CAGGAGGACATGAGCAACTTAAGCGGACTTAAAACAGGACGGTTAAGATTAGGCGTCTGCCCTATGATGAGCAGTCTAAT
TATCGGGCTACTGACCAGTTACCGAAAACGTTATCCCGGCGTTGAGCTGCAAATGTATGAATACGGCGGATTTGGTTGTG
AACAGGCGCTGCTGAATAACAGCTTAGACATCGCCTTTACCGCACTGCCAACCACCCATGAGACCGAGCTGGTGAATCAA
CCGCTCACCAAGTATCCCCTGCTCGCTTGTTTGCCCGATGGGCATCCGCTCGCCAGTCAATCTCACCTCAGCTGGCAGGA
TTTTGAGCCCTATCCCTTTATTCTCTATAACGAAGATTTTTCCTTGGCGAAGCTAATAAATCGCCTGAGTCGTAAGGCGG
GAGTGCAACTCAATATCGCGTTTCGAAGCGGCCAATGGGACTTTCTCGCCGCTATGGTCGAGGCCGATATGGGCCTAGCG
ATTTTACCCGAACCGATTTGCCAAAAACTCAGCACCAGCAAGTTAGTGTTTAGACCTATGCAACCGGCGATGACCTGGGA
TTTAGCCCTCATTTGGCGGCAAAATCTACCTTTAACCCCTGCGGCCAATGCGTTACTGGAACTGAGTAAACAGAAAGCAC
TGCGTTAA

Upstream 100 bases:

>100_bases
TTTCATTGGTTATTCCCCTATTCTGTTAACGAGCTCAAAGTAATACTTAGGCCATCATCAGTAAAATGAATTAACGCCAT
ACCATGGATTCCATTTAAGC

Downstream 100 bases:

>100_bases
ACCGCTCCTTCAAGGCTTGGGCTTAGACTAAGCCTTAGACTGGGCTTGAACTAAGCCTTAGGCTGCAACACTCAAGCTAT
GTGTATCCTTAAATTTCACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNIPIKTLQCFLTLVETENFTRAAEKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQAGQLFEHSAREILGQWHRL
QEDMSNLSGLKTGRLRLGVCPMMSSLIIGLLTSYRKRYPGVELQMYEYGGFGCEQALLNNSLDIAFTALPTTHETELVNQ
PLTKYPLLACLPDGHPLASQSHLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLAAMVEADMGLA
ILPEPICQKLSTSKLVFRPMQPAMTWDLALIWRQNLPLTPAANALLELSKQKALR

Sequences:

>Translated_295_residues
MNIPIKTLQCFLTLVETENFTRAAEKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQAGQLFEHSAREILGQWHRL
QEDMSNLSGLKTGRLRLGVCPMMSSLIIGLLTSYRKRYPGVELQMYEYGGFGCEQALLNNSLDIAFTALPTTHETELVNQ
PLTKYPLLACLPDGHPLASQSHLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLAAMVEADMGLA
ILPEPICQKLSTSKLVFRPMQPAMTWDLALIWRQNLPLTPAANALLELSKQKALR
>Mature_295_residues
MNIPIKTLQCFLTLVETENFTRAAEKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQAGQLFEHSAREILGQWHRL
QEDMSNLSGLKTGRLRLGVCPMMSSLIIGLLTSYRKRYPGVELQMYEYGGFGCEQALLNNSLDIAFTALPTTHETELVNQ
PLTKYPLLACLPDGHPLASQSHLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLAAMVEADMGLA
ILPEPICQKLSTSKLVFRPMQPAMTWDLALIWRQNLPLTPAANALLELSKQKALR

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=27.3356401384083, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=28.5223367697594, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=27.4368231046931, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=26.1904761904762, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=24.8299319727891, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788887, Length=267, Percent_Identity=26.9662921348315, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI2367136, Length=284, Percent_Identity=23.943661971831, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788297, Length=254, Percent_Identity=28.3464566929134, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790208, Length=253, Percent_Identity=25.296442687747, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790783, Length=296, Percent_Identity=26.6891891891892, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=25.0836120401338, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789204, Length=288, Percent_Identity=25.6944444444444, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789506, Length=287, Percent_Identity=21.602787456446, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787530, Length=240, Percent_Identity=21.25, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=257, Percent_Identity=24.9027237354086, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082184, Length=253, Percent_Identity=25.296442687747, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=27.9329608938547, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=198, Percent_Identity=23.7373737373737, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786713, Length=278, Percent_Identity=23.7410071942446, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33379; Mature: 33379

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50931 HTH_LYSR ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPIKTLQCFLTLVETENFTRAAEKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELT
CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEHH
QAGQLFEHSAREILGQWHRLQEDMSNLSGLKTGRLRLGVCPMMSSLIIGLLTSYRKRYPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCC
VELQMYEYGGFGCEQALLNNSLDIAFTALPTTHETELVNQPLTKYPLLACLPDGHPLASQ
CEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCHHHHHCCCHHHCCEEEECCCCCCCCCC
SHLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLAAMVEADMGLA
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCE
ILPEPICQKLSTSKLVFRPMQPAMTWDLALIWRQNLPLTPAANALLELSKQKALR
ECCHHHHHHCCCCCEEECCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIPIKTLQCFLTLVETENFTRAAEKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELT
CCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEHH
QAGQLFEHSAREILGQWHRLQEDMSNLSGLKTGRLRLGVCPMMSSLIIGLLTSYRKRYPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCC
VELQMYEYGGFGCEQALLNNSLDIAFTALPTTHETELVNQPLTKYPLLACLPDGHPLASQ
CEEEEEECCCCCHHHHHHCCCCCEEEEECCCCCHHHHHCCCHHHCCEEEECCCCCCCCCC
SHLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLAAMVEADMGLA
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCE
ILPEPICQKLSTSKLVFRPMQPAMTWDLALIWRQNLPLTPAANALLELSKQKALR
ECCHHHHHHCCCCCEEECCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]