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The map label for this gene is yfiC [C]

Identifier: 117921771

GI number: 117921771

Start: 3995499

End: 3996224

Strand: Direct

Name: yfiC [C]

Synonym: Shewana3_3333

Alternate gene names: 117921771

Gene position: 3995499-3996224 (Clockwise)

Preceding gene: 117921764

Following gene: 117921774

Centisome position: 80.36

GC content: 50.83

Gene sequence:

>726_bases
ATGGCATTTACCTTTAAACAATTCCACATTGATGATCTTAATTGCGGTATGCCCGTCAGCACCGACGGCGTGATATTAGG
TGCATGGGCTCCGCTGTCGCGGGCTAAGCATATTCTCGATATTGGGGCGGGAAGTGGATTATTGAGTTTAATGGCGGCGC
AGCGCAGCCAAGGGCAAATCACCGCTGTCGAGTTGGAGGAAAAAGCCGCCGCGGCGTGCCAATACAATATGACGCAAAGT
CCGTGGGCGGATAGATGTAAGCTCATCCATGGCGATATTCAGCACGTTTGCCAACAAGCTGAGTATCAAGAATATTTCGA
CCATATCATCTGCAACCCGCCCTACTTCGAACATGGCCCCAAGGCAAATGAGCAACACAGGGCGATGGCGCGCCACACTG
ACACCTTAGGCTTTACGCCCTTACTCGAGGCGATAAGTCAGTGCCTGTCGCATGAAGGCCACGCCAGCCTGATCCTGCCC
ATCCAAAGCCTGACGCGCTTTAAGGCCTGCCTGCATCAGACTCAACTTTATCTCGTAAAGGAAGTGAGGGTAAAAAGCAT
GGAGAATAAGGACGCGAATCGTGTCTTGCTGCTGTTGGCTAAGATTCTTTTAACTCAAAGTCAGGATGAACCCTGTCAGC
ACACAGAGCTCACCCTACGTGGGGAAGATGGCCGCTATACCGAGCAAATGATTGCCCTGACCAAAGATTTTTACCTAAAG
CTTTAA

Upstream 100 bases:

>100_bases
TCACTAAACCATAAAAATCTTAGCTAAAGCGCGAACGGCCATTTAAAATAGCGGCAATCTTAAATCGCCCCCATTAATTC
ACTCGATAGTCTGATATCCA

Downstream 100 bases:

>100_bases
TTCGAGTAGCAATAAGGCTCGCATCAAGAGCCTTATCTTTTGTAGCGAATCTAATATCAGCTATCTATCCATTTATTTTT
AATCTCAAGCACTTTGTCTA

Product: methyltransferase small

Products: NA

Alternate protein names: tRNA m6A37 methyltransferase

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MAFTFKQFHIDDLNCGMPVSTDGVILGAWAPLSRAKHILDIGAGSGLLSLMAAQRSQGQITAVELEEKAAAACQYNMTQS
PWADRCKLIHGDIQHVCQQAEYQEYFDHIICNPPYFEHGPKANEQHRAMARHTDTLGFTPLLEAISQCLSHEGHASLILP
IQSLTRFKACLHQTQLYLVKEVRVKSMENKDANRVLLLLAKILLTQSQDEPCQHTELTLRGEDGRYTEQMIALTKDFYLK
L

Sequences:

>Translated_241_residues
MAFTFKQFHIDDLNCGMPVSTDGVILGAWAPLSRAKHILDIGAGSGLLSLMAAQRSQGQITAVELEEKAAAACQYNMTQS
PWADRCKLIHGDIQHVCQQAEYQEYFDHIICNPPYFEHGPKANEQHRAMARHTDTLGFTPLLEAISQCLSHEGHASLILP
IQSLTRFKACLHQTQLYLVKEVRVKSMENKDANRVLLLLAKILLTQSQDEPCQHTELTLRGEDGRYTEQMIALTKDFYLK
L
>Mature_240_residues
AFTFKQFHIDDLNCGMPVSTDGVILGAWAPLSRAKHILDIGAGSGLLSLMAAQRSQGQITAVELEEKAAAACQYNMTQSP
WADRCKLIHGDIQHVCQQAEYQEYFDHIICNPPYFEHGPKANEQHRAMARHTDTLGFTPLLEAISQCLSHEGHASLILPI
QSLTRFKACLHQTQLYLVKEVRVKSMENKDANRVLLLLAKILLTQSQDEPCQHTELTLRGEDGRYTEQMIALTKDFYLKL

Specific function: Specifically methylates the adenine in position 37 of tRNA(Val)

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. tRNA (adenine-N(6)-)-methyltransferase family

Homologues:

Organism=Escherichia coli, GI87082131, Length=240, Percent_Identity=41.6666666666667, Blast_Score=170, Evalue=7e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMN6_SHESA (A0L0I8)

Other databases:

- EMBL:   CP000469
- RefSeq:   YP_870963.1
- ProteinModelPortal:   A0L0I8
- STRING:   A0L0I8
- GeneID:   4477634
- GenomeReviews:   CP000469_GR
- KEGG:   shn:Shewana3_3333
- NMPDR:   fig|94122.5.peg.3341
- eggNOG:   COG4123
- HOGENOM:   HBG307609
- OMA:   FKQFHIN
- PhylomeDB:   A0L0I8
- ProtClustDB:   CLSK575923
- BioCyc:   SSP94122:SHEWANA3_3333-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01872
- InterPro:   IPR002052
- InterPro:   IPR007848
- InterPro:   IPR022882

Pfam domain/function: PF05175 MTS

EC number: =2.1.1.55

Molecular weight: Translated: 27119; Mature: 26988

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFTFKQFHIDDLNCGMPVSTDGVILGAWAPLSRAKHILDIGAGSGLLSLMAAQRSQGQI
CCEEECEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHEECCCCCHHHHHHHHHCCCCCE
TAVELEEKAAAACQYNMTQSPWADRCKLIHGDIQHVCQQAEYQEYFDHIICNPPYFEHGP
EEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KANEQHRAMARHTDTLGFTPLLEAISQCLSHEGHASLILPIQSLTRFKACLHQTQLYLVK
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
EVRVKSMENKDANRVLLLLAKILLTQSQDEPCQHTELTLRGEDGRYTEQMIALTKDFYLK
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure 
AFTFKQFHIDDLNCGMPVSTDGVILGAWAPLSRAKHILDIGAGSGLLSLMAAQRSQGQI
CEEECEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHEECCCCCHHHHHHHHHCCCCCE
TAVELEEKAAAACQYNMTQSPWADRCKLIHGDIQHVCQQAEYQEYFDHIICNPPYFEHGP
EEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
KANEQHRAMARHTDTLGFTPLLEAISQCLSHEGHASLILPIQSLTRFKACLHQTQLYLVK
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
EVRVKSMENKDANRVLLLLAKILLTQSQDEPCQHTELTLRGEDGRYTEQMIALTKDFYLK
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA