| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is pqqL [C]
Identifier: 117921599
GI number: 117921599
Start: 3790746
End: 3793595
Strand: Reverse
Name: pqqL [C]
Synonym: Shewana3_3161
Alternate gene names: 117921599
Gene position: 3793595-3790746 (Counterclockwise)
Preceding gene: 117921600
Following gene: 117921598
Centisome position: 76.3
GC content: 49.44
Gene sequence:
>2850_bases ATGTATAAGGGGAATACCTTGAAAAAATGGATATTAGCGGTCGCGATCTCCGCCGCACTCGCAGGTTGTGCCAGCCAAAC CTCAACTCAATTACCCGCGGGTGTAAAGTTAATTGAAAATGTGCAACTGAAGGACTCTGAAGTTGGTATTCCCTTTAAAA AATATCAGCTTGCCAATGGTCTAACGGTTATTTTGCATCAAGATCATTCCGATCCCTTAGTGCATGTCGATGTGACTTAT CACGTCGGCTCGGCCAGAGAACTTGCTGGCCGTTCAGGCTTCGCCCATTTATTCGAACATATGATGTTCCAGGGCTCTGA GCACGTCGCCGATGAGCAACATTTTGAGGTGGTGACCGAGGCGGGGGGCACGCTAAACGGCTCTACCAATACCGACAGAA CCAACTACTTTGAGACAGTCCCTAGCAACCAGCTCGAAAAAATGTTGTGGCTCGAGTCTGACCGTATGGGCTTTTTGTTG CCGGCGCTGACCAGCGAGAAGTTTGAAGTACAGCGCGAGACAGTGAAAAACGAGCGTGCTCAACGCATTGATAATCAACC CTATGGCCGAATGAGCGAGCGCTTTAATCAGGCGATGTTCCCGGTCGGTCATCCCTATTCTTGGCCTGTGATCGGCTGGC CAGAGGATCTTAACCGCGCCACAGTGGATGATGTGAAACACTTTTTCCAGCGTTGGTACGGCCCGAATAACGCCACTCTG ACCATTGGCGGCGATTTTGATGAACTACAAGCCTTAGCCTGGGTAAACAAATACTTTGGCGAAATCCCCCGTGGCCCCGA GGTTCAGCCAGAGCCCAAGACGTTAGTCACGCTCGATAAGACGCGCTATATCTCAATGGAAGATAACGTGCATTTACCGC TGATCCGTATCGGCTTTCCGACTGTGTATGCCAGCCATCCCGATGAAGCCGCGCTGGACTTATTAGCCAATATCCTCGGT GGCGGTAAAACCTCACTCGTTTACAAAAACTTGGTTAAGGATGGTTATGCAGTACAGGCAAGCGTGAGCCAACCCTGCCA AGAGTTAGCCTGTCAGATGTCGATTTATGCCTTAGCCAATCCGCAAAAAGGCGCGACCTTAGCCGAACTTGAGCAGCGTA TTCTCGACTCGATTAATGAGTTTGAGCAGCGCGGCGTCACCGACGATGACCTGCAAAAAGTGAAAGTGCAGTTTGAGGCC GATACCATTTTTGGCCTGCAGAGCGTAAAAGGCAAAGTGTCTATGCTTGCCTTGAATCAAACCATGTTTGGTGAGCCGAA TAAGATTGCAGTAGACCTTGCGCGCTACGCCAATGTGACCAAAGACGATGTGATGCGGGTATTTAAAAAGTACATCAAAG ACAAGCCCATGGTGGTGATGAGTGTGGTGCCACAGGGAATGACGGCTTTAGTCGCTCATCCGGATAACTTCACCCCTCAA ACCTTGCCCGTGGCGTATACGGCTGTAGAGGGGGATTTACCCGCCGCTAAGTTAGTGTCAAGTTTCGACCGTTCCAAAAT GCCTGCCTCGGGCGCGGCGCCCGTGCTAAAAGTCCCGACGATTTGGACCACTAAGTTAGCCAATGGCATCGAAGTGATGG GCACTCAAAGCAGCGAAACTCCAACAGTAGAGTTAGTGATTTATCTTAACGGCGGACACAGATTAGTGCCCGTTGAAAAG GCGGGCCTGGCAAGCTTAACCGCTGAGATGCTAAATGAGTCGACTCAAAAGCGCTCAACCGAGCAGTTGTCGCAGGCGCT TGAGATGCTCGGCAGTACGGTGGACTTTAGTGCCTCCGAATCCCAAAGTACGATTAAGGTGTCGGCGCTTACCGAGCACT TGGATGAAACCTTAGCCATTTTAGAAGAAAAGCTGTTCCAACCTGCGTTTAACGAGGCCGACTTTGCACGGGTGAAGCAA CAACAGTTGCAGCAAATTCAGCATATGCAGTCAGATCCAGGCTATGTCGCTAACTCTGCGTTGTATAGCTTGCTCTATGG TAAGAATAACGCTCAAGGCGTGAGTGATGCGGGGACCTTAGATTCCGTTGCTGCGCTGACTCTTGCGGATGTGAAGGCGT TTTATGCTGAACAGTACCGTGGGGCAAACGCTAAAATCATTACGGTAGCGGATCTGCCTGAAAGTGCATTGCTACCTAAG CTCGCGGGATTGAGTCAATGGCAAGGGGAGGCGAGTAGATTGCCGCCACTCAAGTCATTCCCTGCACTGAAGGGCGGGAC TATCTATCTTATCGATAAACCGGGCGCCGCTCAGTCGGTGATTAACATTGCGAAACGTGCCTTACCCTATGATGCAACAG GTAATTATTTTAAATCTTACCTTATGAACTATCCGCTTGGTGGTGCCTTCAATAGCCGTATTAACCTCAATCTACGTGAG AACAAGGGGTATACCTATGGGGCTCGCAGTTCATTTACCGGTGGCGTCGAAGTCGGTGACTTTGTGGCCTCGAGTGATGT GCGTACCGATGTGACGGCTAAGGCGGTAAATGAATTTATCAAAGAGATCAAAGTCTATCAGCAGAATGGGATGACAGACA CTGAGCTCGGCTTCATGCGTAACTCGGTTTCCCAAGGGCAAGCATTGGATTATGAGACGCCTTATCAGAAGGCGGGTTTT ATGCGGATGATCCAGCGTTACCAGCTGAGCCAAGATTTTACTACCGAGCAGGACAAAATTATAAATACTGTAACAAAAGA TGAACTCAATGCCCTCGCGGCTTCCGAGCTAGATATCTCGAAAATGATCATCTTAGTTGTCGGGGATAAGGCGAAAATTG AAGCGGATTTAGCAACTTTAGGCTATCCAATTGAAACTTTAGTATTGTAA
Upstream 100 bases:
>100_bases AAGGAAGTCCTTGTATTACTTGGAACTTTGCAGGGCTTAATGAGTCTGAACTCATTATTGATACCGAGCATTCTACAGGG GCTAATTTTTTAGCCTATTG
Downstream 100 bases:
>100_bases ATTAGCTTTTCGACCCAATATAAATTGCAGACAAGCTAATTGTGCAGCACAACCTCGCTGCCAGTCTAAAGTATTAACGA GTAAGACGGTGACAGCATTA
Product: peptidase M16 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 949; Mature: 949
Protein sequence:
>949_residues MYKGNTLKKWILAVAISAALAGCASQTSTQLPAGVKLIENVQLKDSEVGIPFKKYQLANGLTVILHQDHSDPLVHVDVTY HVGSARELAGRSGFAHLFEHMMFQGSEHVADEQHFEVVTEAGGTLNGSTNTDRTNYFETVPSNQLEKMLWLESDRMGFLL PALTSEKFEVQRETVKNERAQRIDNQPYGRMSERFNQAMFPVGHPYSWPVIGWPEDLNRATVDDVKHFFQRWYGPNNATL TIGGDFDELQALAWVNKYFGEIPRGPEVQPEPKTLVTLDKTRYISMEDNVHLPLIRIGFPTVYASHPDEAALDLLANILG GGKTSLVYKNLVKDGYAVQASVSQPCQELACQMSIYALANPQKGATLAELEQRILDSINEFEQRGVTDDDLQKVKVQFEA DTIFGLQSVKGKVSMLALNQTMFGEPNKIAVDLARYANVTKDDVMRVFKKYIKDKPMVVMSVVPQGMTALVAHPDNFTPQ TLPVAYTAVEGDLPAAKLVSSFDRSKMPASGAAPVLKVPTIWTTKLANGIEVMGTQSSETPTVELVIYLNGGHRLVPVEK AGLASLTAEMLNESTQKRSTEQLSQALEMLGSTVDFSASESQSTIKVSALTEHLDETLAILEEKLFQPAFNEADFARVKQ QQLQQIQHMQSDPGYVANSALYSLLYGKNNAQGVSDAGTLDSVAALTLADVKAFYAEQYRGANAKIITVADLPESALLPK LAGLSQWQGEASRLPPLKSFPALKGGTIYLIDKPGAAQSVINIAKRALPYDATGNYFKSYLMNYPLGGAFNSRINLNLRE NKGYTYGARSSFTGGVEVGDFVASSDVRTDVTAKAVNEFIKEIKVYQQNGMTDTELGFMRNSVSQGQALDYETPYQKAGF MRMIQRYQLSQDFTTEQDKIINTVTKDELNALAASELDISKMIILVVGDKAKIEADLATLGYPIETLVL
Sequences:
>Translated_949_residues MYKGNTLKKWILAVAISAALAGCASQTSTQLPAGVKLIENVQLKDSEVGIPFKKYQLANGLTVILHQDHSDPLVHVDVTY HVGSARELAGRSGFAHLFEHMMFQGSEHVADEQHFEVVTEAGGTLNGSTNTDRTNYFETVPSNQLEKMLWLESDRMGFLL PALTSEKFEVQRETVKNERAQRIDNQPYGRMSERFNQAMFPVGHPYSWPVIGWPEDLNRATVDDVKHFFQRWYGPNNATL TIGGDFDELQALAWVNKYFGEIPRGPEVQPEPKTLVTLDKTRYISMEDNVHLPLIRIGFPTVYASHPDEAALDLLANILG GGKTSLVYKNLVKDGYAVQASVSQPCQELACQMSIYALANPQKGATLAELEQRILDSINEFEQRGVTDDDLQKVKVQFEA DTIFGLQSVKGKVSMLALNQTMFGEPNKIAVDLARYANVTKDDVMRVFKKYIKDKPMVVMSVVPQGMTALVAHPDNFTPQ TLPVAYTAVEGDLPAAKLVSSFDRSKMPASGAAPVLKVPTIWTTKLANGIEVMGTQSSETPTVELVIYLNGGHRLVPVEK AGLASLTAEMLNESTQKRSTEQLSQALEMLGSTVDFSASESQSTIKVSALTEHLDETLAILEEKLFQPAFNEADFARVKQ QQLQQIQHMQSDPGYVANSALYSLLYGKNNAQGVSDAGTLDSVAALTLADVKAFYAEQYRGANAKIITVADLPESALLPK LAGLSQWQGEASRLPPLKSFPALKGGTIYLIDKPGAAQSVINIAKRALPYDATGNYFKSYLMNYPLGGAFNSRINLNLRE NKGYTYGARSSFTGGVEVGDFVASSDVRTDVTAKAVNEFIKEIKVYQQNGMTDTELGFMRNSVSQGQALDYETPYQKAGF MRMIQRYQLSQDFTTEQDKIINTVTKDELNALAASELDISKMIILVVGDKAKIEADLATLGYPIETLVL >Mature_949_residues MYKGNTLKKWILAVAISAALAGCASQTSTQLPAGVKLIENVQLKDSEVGIPFKKYQLANGLTVILHQDHSDPLVHVDVTY HVGSARELAGRSGFAHLFEHMMFQGSEHVADEQHFEVVTEAGGTLNGSTNTDRTNYFETVPSNQLEKMLWLESDRMGFLL PALTSEKFEVQRETVKNERAQRIDNQPYGRMSERFNQAMFPVGHPYSWPVIGWPEDLNRATVDDVKHFFQRWYGPNNATL TIGGDFDELQALAWVNKYFGEIPRGPEVQPEPKTLVTLDKTRYISMEDNVHLPLIRIGFPTVYASHPDEAALDLLANILG GGKTSLVYKNLVKDGYAVQASVSQPCQELACQMSIYALANPQKGATLAELEQRILDSINEFEQRGVTDDDLQKVKVQFEA DTIFGLQSVKGKVSMLALNQTMFGEPNKIAVDLARYANVTKDDVMRVFKKYIKDKPMVVMSVVPQGMTALVAHPDNFTPQ TLPVAYTAVEGDLPAAKLVSSFDRSKMPASGAAPVLKVPTIWTTKLANGIEVMGTQSSETPTVELVIYLNGGHRLVPVEK AGLASLTAEMLNESTQKRSTEQLSQALEMLGSTVDFSASESQSTIKVSALTEHLDETLAILEEKLFQPAFNEADFARVKQ QQLQQIQHMQSDPGYVANSALYSLLYGKNNAQGVSDAGTLDSVAALTLADVKAFYAEQYRGANAKIITVADLPESALLPK LAGLSQWQGEASRLPPLKSFPALKGGTIYLIDKPGAAQSVINIAKRALPYDATGNYFKSYLMNYPLGGAFNSRINLNLRE NKGYTYGARSSFTGGVEVGDFVASSDVRTDVTAKAVNEFIKEIKVYQQNGMTDTELGFMRNSVSQGQALDYETPYQKAGF MRMIQRYQLSQDFTTEQDKIINTVTKDELNALAASELDISKMIILVVGDKAKIEADLATLGYPIETLVL
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Escherichia coli, GI1787770, Length=216, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=3e-14, Organism=Caenorhabditis elegans, GI72001443, Length=335, Percent_Identity=25.3731343283582, Blast_Score=70, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 104427; Mature: 104427
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKGNTLKKWILAVAISAALAGCASQTSTQLPAGVKLIENVQLKDSEVGIPFKKYQLANG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCEECCCCCCCCHHHEECCCC LTVILHQDHSDPLVHVDVTYHVGSARELAGRSGFAHLFEHMMFQGSEHVADEQHFEVVTE EEEEEECCCCCCEEEEEEEEECCCHHHHHCCCCHHHHHHHHHHCCCHHCCCHHHHHHHHH AGGTLNGSTNTDRTNYFETVPSNQLEKMLWLESDRMGFLLPALTSEKFEVQRETVKNERA CCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHHHHHH QRIDNQPYGRMSERFNQAMFPVGHPYSWPVIGWPEDLNRATVDDVKHFFQRWYGPNNATL HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCEE TIGGDFDELQALAWVNKYFGEIPRGPEVQPEPKTLVTLDKTRYISMEDNVHLPLIRIGFP EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCEEEEECCC TVYASHPDEAALDLLANILGGGKTSLVYKNLVKDGYAVQASVSQPCQELACQMSIYALAN EEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHEEEECC PQKGATLAELEQRILDSINEFEQRGVTDDDLQKVKVQFEADTIFGLQSVKGKVSMLALNQ CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEEECCHHHHHHHHCCCEEEEEECH TMFGEPNKIAVDLARYANVTKDDVMRVFKKYIKDKPMVVMSVVPQGMTALVAHPDNFTPQ HHCCCCCHHEEEHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCC TLPVAYTAVEGDLPAAKLVSSFDRSKMPASGAAPVLKVPTIWTTKLANGIEVMGTQSSET CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCEEHHHHCCCEEEEECCCCCC PTVELVIYLNGGHRLVPVEKAGLASLTAEMLNESTQKRSTEQLSQALEMLGSTVDFSASE CEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC SQSTIKVSALTEHLDETLAILEEKLFQPAFNEADFARVKQQQLQQIQHMQSDPGYVANSA CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH LYSLLYGKNNAQGVSDAGTLDSVAALTLADVKAFYAEQYRGANAKIITVADLPESALLPK HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH LAGLSQWQGEASRLPPLKSFPALKGGTIYLIDKPGAAQSVINIAKRALPYDATGNYFKSY HHCCHHHCCCHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHH LMNYPLGGAFNSRINLNLRENKGYTYGARSSFTGGVEVGDFVASSDVRTDVTAKAVNEFI HHHCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHH KEIKVYQQNGMTDTELGFMRNSVSQGQALDYETPYQKAGFMRMIQRYQLSQDFTTEQDKI HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH INTVTKDELNALAASELDISKMIILVVGDKAKIEADLATLGYPIETLVL HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHCC >Mature Secondary Structure MYKGNTLKKWILAVAISAALAGCASQTSTQLPAGVKLIENVQLKDSEVGIPFKKYQLANG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCEECCCCCCCCHHHEECCCC LTVILHQDHSDPLVHVDVTYHVGSARELAGRSGFAHLFEHMMFQGSEHVADEQHFEVVTE EEEEEECCCCCCEEEEEEEEECCCHHHHHCCCCHHHHHHHHHHCCCHHCCCHHHHHHHHH AGGTLNGSTNTDRTNYFETVPSNQLEKMLWLESDRMGFLLPALTSEKFEVQRETVKNERA CCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHHHHHH QRIDNQPYGRMSERFNQAMFPVGHPYSWPVIGWPEDLNRATVDDVKHFFQRWYGPNNATL HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCEE TIGGDFDELQALAWVNKYFGEIPRGPEVQPEPKTLVTLDKTRYISMEDNVHLPLIRIGFP EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCEEEEECCC TVYASHPDEAALDLLANILGGGKTSLVYKNLVKDGYAVQASVSQPCQELACQMSIYALAN EEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHEEEECC PQKGATLAELEQRILDSINEFEQRGVTDDDLQKVKVQFEADTIFGLQSVKGKVSMLALNQ CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEEECCHHHHHHHHCCCEEEEEECH TMFGEPNKIAVDLARYANVTKDDVMRVFKKYIKDKPMVVMSVVPQGMTALVAHPDNFTPQ HHCCCCCHHEEEHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCC TLPVAYTAVEGDLPAAKLVSSFDRSKMPASGAAPVLKVPTIWTTKLANGIEVMGTQSSET CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCEEHHHHCCCEEEEECCCCCC PTVELVIYLNGGHRLVPVEKAGLASLTAEMLNESTQKRSTEQLSQALEMLGSTVDFSASE CEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC SQSTIKVSALTEHLDETLAILEEKLFQPAFNEADFARVKQQQLQQIQHMQSDPGYVANSA CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH LYSLLYGKNNAQGVSDAGTLDSVAALTLADVKAFYAEQYRGANAKIITVADLPESALLPK HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH LAGLSQWQGEASRLPPLKSFPALKGGTIYLIDKPGAAQSVINIAKRALPYDATGNYFKSY HHCCHHHCCCHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHH LMNYPLGGAFNSRINLNLRENKGYTYGARSSFTGGVEVGDFVASSDVRTDVTAKAVNEFI HHHCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHH KEIKVYQQNGMTDTELGFMRNSVSQGQALDYETPYQKAGFMRMIQRYQLSQDFTTEQDKI HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH INTVTKDELNALAASELDISKMIILVVGDKAKIEADLATLGYPIETLVL HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]