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The map label for this gene is yqaA [H]

Identifier: 117921600

GI number: 117921600

Start: 3793737

End: 3794162

Strand: Reverse

Name: yqaA [H]

Synonym: Shewana3_3162

Alternate gene names: 117921600

Gene position: 3794162-3793737 (Counterclockwise)

Preceding gene: 117921602

Following gene: 117921599

Centisome position: 76.31

GC content: 49.3

Gene sequence:

>426_bases
ATGTCTGAATTAAGCATGATGTTTTCTGGGGCTTTTTTAGCCGCGACCTTGTTACCGGGAGGATCAGAAGTTTTACTGAT
TGCGTTGCTGAATAAAGCGCCGCAAGTTTGGGTCGCATTAGTGGTGGTGGCCAGTGTGGGCAATACCTTAGGGGCGATGA
CAAGTTTTTATCTAGGGCGGTTCGGTCGGTTTGCAAAGTGCCCCGAGGCCCTAAGTGAGGGAAAGCAAGCCAAAGCCTTA
GCCATTATTGAGCGTTACGGTGTTTGGTCGTTATTGTTGTCGTGGGCGCCAGTGATTGGCGATCTATTATGTTTATTGGC
GGGATGGTTGAAGCTTCGGGCGTTCCCCGCATTAGTGATGATTTTGATCGGCAAAACCCTGCGTTACCTTATTGTGGCGG
CCGCCACATTACATTGGTTTAGTTAG

Upstream 100 bases:

>100_bases
GAGTTTGTTGTGAAATGGTTAGTCGCTACATCCTTTTAACGCTGTGGTAGTTCACTGTTTGATAGCGTGAAAGAGCAGTA
ATTTCATAGAGTAAGCTTTT

Downstream 100 bases:

>100_bases
TTTTTAAACGTGTTGTTCGGTTAAAGGACGATAAGACTGCAAAGGAAGTCCTTGTATTACTTGGAACTTTGCAGGGCTTA
ATGAGTCTGAACTCATTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSELSMMFSGAFLAATLLPGGSEVLLIALLNKAPQVWVALVVVASVGNTLGAMTSFYLGRFGRFAKCPEALSEGKQAKAL
AIIERYGVWSLLLSWAPVIGDLLCLLAGWLKLRAFPALVMILIGKTLRYLIVAAATLHWFS

Sequences:

>Translated_141_residues
MSELSMMFSGAFLAATLLPGGSEVLLIALLNKAPQVWVALVVVASVGNTLGAMTSFYLGRFGRFAKCPEALSEGKQAKAL
AIIERYGVWSLLLSWAPVIGDLLCLLAGWLKLRAFPALVMILIGKTLRYLIVAAATLHWFS
>Mature_140_residues
SELSMMFSGAFLAATLLPGGSEVLLIALLNKAPQVWVALVVVASVGNTLGAMTSFYLGRFGRFAKCPEALSEGKQAKALA
IIERYGVWSLLLSWAPVIGDLLCLLAGWLKLRAFPALVMILIGKTLRYLIVAAATLHWFS

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0489 [H]

Homologues:

Organism=Escherichia coli, GI1789045, Length=133, Percent_Identity=48.8721804511278, Blast_Score=112, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 15170; Mature: 15038

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELSMMFSGAFLAATLLPGGSEVLLIALLNKAPQVWVALVVVASVGNTLGAMTSFYLGR
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGRFAKCPEALSEGKQAKALAIIERYGVWSLLLSWAPVIGDLLCLLAGWLKLRAFPALVM
HCCHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIGKTLRYLIVAAATLHWFS
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SELSMMFSGAFLAATLLPGGSEVLLIALLNKAPQVWVALVVVASVGNTLGAMTSFYLGR
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGRFAKCPEALSEGKQAKALAIIERYGVWSLLLSWAPVIGDLLCLLAGWLKLRAFPALVM
HCCHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIGKTLRYLIVAAATLHWFS
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]