| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is hlyB [H]
Identifier: 117921526
GI number: 117921526
Start: 3702013
End: 3704133
Strand: Reverse
Name: hlyB [H]
Synonym: Shewana3_3088
Alternate gene names: 117921526
Gene position: 3704133-3702013 (Counterclockwise)
Preceding gene: 117921529
Following gene: 117921521
Centisome position: 74.5
GC content: 50.02
Gene sequence:
>2121_bases ATGAAGCATTTGTCCATCAGTACTAAGTTGTTGTGGATCACTTCCGCCTTATTCCTCTCAATTGTTGCCATTCTTTCCAT CAGCCTCTGGTGGACCCTTTCGGATCAAAACACAGAGCTGTCTAATCAGGTTCAAGAGACATTACAAACCGAAACCCGTG ACAAACTCGAAGCCCGTGCGGGCGAATATGGTGAAATGGTGGCGGGCTTTATCAATGAAGCCTATCGGATCCCGTACTCT TTTTCCGGCATGTTAGAGAGCACTGCGGAAGAGTTGCCATTAAAGCGTGATCGCTTAGAGCTGGCCGTGGCGGCGGTATT AAAGAAAAATAACCAGATATCCTCCATGTACGCGCAGTTTGAGCCTAATGGTTACGATGGGCTCGACAGTGAGTTTTTAA ATGTCGAGGTTAGCCATAGCGTCGCATCATCGGGGTCATTGGAGGTGTACTACACTCGCAACGATGATGGCACGGTCGAA CATAATCAAGTAGATGATTCAGCAGAAAAATATGTCACGACCTTAAACGAGTTTGGGATCCGTGAAGCTGAATGGTATCT CTGTGCTAAGGAAACCTTAAAGCCTTGTTTGATGGAGCCCTATCTCTATGAAATCACCCCAGGTAATAATGCGCTGATGA CCTCTTTAACCGTGCCAGTGGTCAAGCATAAGCAGTTTATTGGGGTGGTGGGCGTCGATGTGAACTTGCCCGTATTTCAG GCCCTAATCGATAAATTGTCTAAGAGTCTTTACGACGGTCAAGCCAAGGTAACCTTACTCAGTACCCGTGGGTTAGTGGT TGCCGCGAGTCATTACAGCAAAAAAGCGCGCCCTCTGAGCGAATCTATCGACCCTAAACTTGCCTCGCAGATAGTCGCGT TACATAAAAATGGCGGCTATATGGCAAACGATGATGAGATTATCGTGGCCTACCCGATAAAAATCCCACTGGCGAAAGCG GAATGGTCATTGGCTATCCAAGTCCCTAAGGCTCAAGCCTTTAAGAGCTCCATTGAGTTGAATGACAAAATGGATGAAAT GGCCACATCCCTTGGCAGCATCTTGTTGATGGTCGGTTTAGCCGTGTCTATTCTCGCCGTGGTTACCATCAGCATAGTGA TCCGCAGCATTATTGCGCCGCTCAAGATGATCCAAGGCCGTGTGGAACACTTGGCCAGTGCCGATGGTGACTTAACCCAA TCCATTGTGGTCGATGCCCATGCGGAACTGATTGCACTGGGTAAAGGCTTCAACTCCTTTATCCATAAGTTGAAAGACTT GATCAGCGAGTTAAAAACGCTTGCGGGACGCACCCAGGAAGAAAGCTTGTCTTCGGCGCAAATTGCGGAGTTGACCCACG ATAGTGTCCATCGTCAGTATGGCGAAATCGAGAGCGTGGTAACCGCGGTCAATGAGATGAGTGCTACGGCGCTTGAAGTG GCGAAAGCTTCTGAGCAAACCGCTGCGGAAACCGAAGCCATGTCCCGCAATGTACGTCTCAGTGAAGAGAGCCTGACTAA GGCCATGGAATATGTGACTACTATGTCGCAGGAGTCGATGCAGGCGAAAGTGGCTGTGAGCAAAGTGGCTGAAAGTAGCA CGAATATCAGCCGTATTCTCGAGGTGATCAGCTCTATTGCCGCGCAAACCAACTTGCTGGCTTTGAACGCCGCAATTGAG GCGGCGCGAGCCGGCGAACAAGGGCGGGGTTTTGCCGTGGTGGCCGATGAGGTGAGGGCGCTTGCCTCTAAAACCCAAAG TTCGACCGATGATATCAGTGTGCTGATCGATGCCCTGCAGCAAGAAGTAAATAGTGCCTCAGGCATTATTGATAAAGGTG CTGAGCGCGCACAAATGGCCGTGTCGCAAACCGAGCAAGCACTCACATCGCTTAATTCTATGGTCAGTCAGATAGAGGAG ATTTCTTCTCAGGTGACGCATATTGCCGCCGCCGCGGAGGAACAAAGCGCGGTAACGGAAGAAGTGAATCGTAATATCAC TGGGATTTCCGACTCGGCCTCGGAGCTGGCGCGCCTTGCGGGTGAAGCGCAGCAAAGCAGTGTGGTCCTTGCCGAACTGG TGAAACAGCAGCATCAACAATTAGGTAAGCTGAAGACCTAA
Upstream 100 bases:
>100_bases TCGTGACTGAGTGCTATTTTTTAAACTGAGAAGCAAAAATAAAAATGAACTAGATCAAAATAATTAGGCTCTTGACCTTC TATCTTTTGGAGTTTACTCG
Downstream 100 bases:
>100_bases ATCGAGTTCCCTTGCACTGCGTGCACAAGGGAAAGTCACCAAGGCGCTTAAGTGAATTTCATTAAGCGCCTTTGTTTTTG GTCTTATTTTAGCAATAGTC
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 706; Mature: 706
Protein sequence:
>706_residues MKHLSISTKLLWITSALFLSIVAILSISLWWTLSDQNTELSNQVQETLQTETRDKLEARAGEYGEMVAGFINEAYRIPYS FSGMLESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQFEPNGYDGLDSEFLNVEVSHSVASSGSLEVYYTRNDDGTVE HNQVDDSAEKYVTTLNEFGIREAEWYLCAKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQ ALIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARPLSESIDPKLASQIVALHKNGGYMANDDEIIVAYPIKIPLAKA EWSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGLAVSILAVVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQ SIVVDAHAELIALGKGFNSFIHKLKDLISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEV AKASEQTAAETEAMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIE AARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQQEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEE ISSQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLKT
Sequences:
>Translated_706_residues MKHLSISTKLLWITSALFLSIVAILSISLWWTLSDQNTELSNQVQETLQTETRDKLEARAGEYGEMVAGFINEAYRIPYS FSGMLESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQFEPNGYDGLDSEFLNVEVSHSVASSGSLEVYYTRNDDGTVE HNQVDDSAEKYVTTLNEFGIREAEWYLCAKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQ ALIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARPLSESIDPKLASQIVALHKNGGYMANDDEIIVAYPIKIPLAKA EWSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGLAVSILAVVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQ SIVVDAHAELIALGKGFNSFIHKLKDLISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEV AKASEQTAAETEAMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIE AARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQQEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEE ISSQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLKT >Mature_706_residues MKHLSISTKLLWITSALFLSIVAILSISLWWTLSDQNTELSNQVQETLQTETRDKLEARAGEYGEMVAGFINEAYRIPYS FSGMLESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQFEPNGYDGLDSEFLNVEVSHSVASSGSLEVYYTRNDDGTVE HNQVDDSAEKYVTTLNEFGIREAEWYLCAKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQ ALIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARPLSESIDPKLASQIVALHKNGGYMANDDEIIVAYPIKIPLAKA EWSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGLAVSILAVVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQ SIVVDAHAELIALGKGFNSFIHKLKDLISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEV AKASEQTAAETEAMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISRILEVISSIAAQTNLLALNAAIE AARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQQEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEE ISSQVTHIAAAAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLKT
Specific function: May form a pore through which the hemolysin can be exported [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI2367378, Length=340, Percent_Identity=28.5294117647059, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1787690, Length=340, Percent_Identity=30.8823529411765, Blast_Score=108, Evalue=9e-25, Organism=Escherichia coli, GI1788195, Length=314, Percent_Identity=27.7070063694268, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788194, Length=338, Percent_Identity=28.698224852071, Blast_Score=102, Evalue=7e-23, Organism=Escherichia coli, GI1789453, Length=200, Percent_Identity=32.5, Blast_Score=95, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 - InterPro: IPR000727 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 76502; Mature: 76502
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHLSISTKLLWITSALFLSIVAILSISLWWTLSDQNTELSNQVQETLQTETRDKLEARA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC GEYGEMVAGFINEAYRIPYSFSGMLESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQF CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHC EPNGYDGLDSEFLNVEVSHSVASSGSLEVYYTRNDDGTVEHNQVDDSAEKYVTTLNEFGI CCCCCCCCCCCCEEEEEECHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC REAEWYLCAKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQ CHHHHHEEHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHCCCEEEEEEECCCCHHHH ALIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARPLSESIDPKLASQIVALHKNGGY HHHHHHHHHHHCCCEEEEEEEECCEEEEECHHHHHCCCCHHCCCHHHHHHHHHHCCCCCE MANDDEIIVAYPIKIPLAKAEWSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGL ECCCCCEEEEEECEEEEECCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH AVSILAVVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQSIVVDAHAELIALGKGFNSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH IHKLKDLISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEV HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKASEQTAAETEAMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISRIL HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH EVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHH QEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISSQVTHIAAAAEEQSAVTE HHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLKT HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKHLSISTKLLWITSALFLSIVAILSISLWWTLSDQNTELSNQVQETLQTETRDKLEARA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC GEYGEMVAGFINEAYRIPYSFSGMLESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQF CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHC EPNGYDGLDSEFLNVEVSHSVASSGSLEVYYTRNDDGTVEHNQVDDSAEKYVTTLNEFGI CCCCCCCCCCCCEEEEEECHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC REAEWYLCAKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQ CHHHHHEEHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHCCCEEEEEEECCCCHHHH ALIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARPLSESIDPKLASQIVALHKNGGY HHHHHHHHHHHCCCEEEEEEEECCEEEEECHHHHHCCCCHHCCCHHHHHHHHHHCCCCCE MANDDEIIVAYPIKIPLAKAEWSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMVGL ECCCCCEEEEEECEEEEECCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH AVSILAVVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQSIVVDAHAELIALGKGFNSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH IHKLKDLISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATALEV HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKASEQTAAETEAMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISRIL HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH EVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDALQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHH QEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISSQVTHIAAAAEEQSAVTE HHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLKT HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2162464; 10952301 [H]