Click here to switch to the map view.

The map label for this gene is rseA [H]

Identifier: 117921470

GI number: 117921470

Start: 3636595

End: 3637218

Strand: Reverse

Name: rseA [H]

Synonym: Shewana3_3031

Alternate gene names: 117921470

Gene position: 3637218-3636595 (Counterclockwise)

Preceding gene: 117921471

Following gene: 117921469

Centisome position: 73.15

GC content: 49.68

Gene sequence:

>624_bases
ATGGATAAATTAGGTCAAGAATGGGTATCTGCCGCTGTCGATGGAGAGACAGATCTGCAGACTATGGCAGAACTTGCTGC
CGATACGCATTCACATAATAAATGGCGTAACTATCATGTGATAGGTGATGCTATGCGGGGCGAATTGCCCCAGACTATGG
CGTTAGACCTTTCCGCCAGTATTGCAGCTGCAATCGAACTTGAGCCTGCCATTGTCTCGCCTCAAGTTAGCGCGCCTGAC
GTCACAGCGGCTCCACAGCAAGTGGCTGTAAATGCTGGCCAAAGCCGTGTTGTGCCCTTATTCAAGCAGTTTGGTCAGTA
TGCGATTGCCGCTACTGTGGCCATGTTCGCCATCGTTGGCGTACAGAACTTTAACCAAACCGCCGATGATGCCGCGTCGC
CATCGCCTGTGCTTATTACCCGTCCTCTTGTCGGTAGTGCATCGCCAGTGAGCCTACAGACAGGTCCTGTGCAGCAAAAT
CAGAGCTACACTAATGATAAAATGAACGAGCAACGTCGCCGAATTAATACTTATATTCAGGACCATATGTTGCAACAACG
ATTGAATACGGGTGCCGTTGTAGAAGACAATAGCGAGGTTATTCCCGTTCCTGTCAATCAGTAG

Upstream 100 bases:

>100_bases
GTACCGTAAGATCTCGTATCTTCCGCGCCCGTGAAGCAATCGATAAAAAACTCCAGCCATTACTGGAAGAGTAACACCCT
TAAATTTAGACAGGTGAACA

Downstream 100 bases:

>100_bases
TAAGGAGTTAGCTTGCGTCTAATCCTGTTGGCTTTGTTAGCCTTGGTATTCCCTGCAGTGGCGCAGGAAGATATGCCTGC
CAAAGTCTGGCTTGAGAAAA

Product: anti sigma-E protein, RseA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MDKLGQEWVSAAVDGETDLQTMAELAADTHSHNKWRNYHVIGDAMRGELPQTMALDLSASIAAAIELEPAIVSPQVSAPD
VTAAPQQVAVNAGQSRVVPLFKQFGQYAIAATVAMFAIVGVQNFNQTADDAASPSPVLITRPLVGSASPVSLQTGPVQQN
QSYTNDKMNEQRRRINTYIQDHMLQQRLNTGAVVEDNSEVIPVPVNQ

Sequences:

>Translated_207_residues
MDKLGQEWVSAAVDGETDLQTMAELAADTHSHNKWRNYHVIGDAMRGELPQTMALDLSASIAAAIELEPAIVSPQVSAPD
VTAAPQQVAVNAGQSRVVPLFKQFGQYAIAATVAMFAIVGVQNFNQTADDAASPSPVLITRPLVGSASPVSLQTGPVQQN
QSYTNDKMNEQRRRINTYIQDHMLQQRLNTGAVVEDNSEVIPVPVNQ
>Mature_207_residues
MDKLGQEWVSAAVDGETDLQTMAELAADTHSHNKWRNYHVIGDAMRGELPQTMALDLSASIAAAIELEPAIVSPQVSAPD
VTAAPQQVAVNAGQSRVVPLFKQFGQYAIAATVAMFAIVGVQNFNQTADDAASPSPVLITRPLVGSASPVSLQTGPVQQN
QSYTNDKMNEQRRRINTYIQDHMLQQRLNTGAVVEDNSEVIPVPVNQ

Specific function: Negative regulator of rpoE [H]

COG id: COG3073

COG function: function code T; Negative regulator of sigma E activity

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseA family [H]

Homologues:

Organism=Escherichia coli, GI1788925, Length=189, Percent_Identity=37.5661375661376, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005573
- InterPro:   IPR005572 [H]

Pfam domain/function: PF03873 RseA_C; PF03872 RseA_N [H]

EC number: NA

Molecular weight: Translated: 22304; Mature: 22304

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLGQEWVSAAVDGETDLQTMAELAADTHSHNKWRNYHVIGDAMRGELPQTMALDLSAS
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCHHHHHHHHH
IAAAIELEPAIVSPQVSAPDVTAAPQQVAVNAGQSRVVPLFKQFGQYAIAATVAMFAIVG
HEEEEEECCCEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VQNFNQTADDAASPSPVLITRPLVGSASPVSLQTGPVQQNQSYTNDKMNEQRRRINTYIQ
HHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
DHMLQQRLNTGAVVEDNSEVIPVPVNQ
HHHHHHHHCCCCEEECCCCEEECCCCC
>Mature Secondary Structure
MDKLGQEWVSAAVDGETDLQTMAELAADTHSHNKWRNYHVIGDAMRGELPQTMALDLSAS
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCHHHHHHHHH
IAAAIELEPAIVSPQVSAPDVTAAPQQVAVNAGQSRVVPLFKQFGQYAIAATVAMFAIVG
HEEEEEECCCEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VQNFNQTADDAASPSPVLITRPLVGSASPVSLQTGPVQQNQSYTNDKMNEQRRRINTYIQ
HHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
DHMLQQRLNTGAVVEDNSEVIPVPVNQ
HHHHHHHHCCCCEEECCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]