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The map label for this gene is rpoE [H]

Identifier: 117921471

GI number: 117921471

Start: 3637245

End: 3637823

Strand: Reverse

Name: rpoE [H]

Synonym: Shewana3_3032

Alternate gene names: 117921471

Gene position: 3637823-3637245 (Counterclockwise)

Preceding gene: 117921473

Following gene: 117921470

Centisome position: 73.16

GC content: 46.46

Gene sequence:

>579_bases
ATGAGTGGACAAATAAGTGATCAACAATTAGTTGAGCGCGTACAACGGGGAGATAAAAACGCTTTTAACCTGTTGGTGCT
TAAATATCAGAGTAAAGTAGTGAGCTTGATTTCACGCTATGTGCGTAACCAAGCCGACGTTACCGATGTGGCACAGGAAG
CGTTTATCAAAGCTTATCGAGCTTTGCCAAACTTTCGCGGAGAAAGTGCGTTTTATACCTGGTTGTACCGCATAGCCGTA
AACACGGCTAAGAATTACCTCGTGTCACAGGGGCGCAGAGCGCCTGCAAATGATGTGGATGCAGAGGATGCCGAATACTA
CGAAGGCAGTGATGCGCTAAAGGAGTTTGCCTCCCCAGAGCGACTAATGTTATCGGACGAAATCAAAAAAGTGGTTTTCG
AGACATTAGAAACCTTGCCGGAAGAATTACGTATGGCGATTTCGCTGCGTGAACTCGATGGGATGAGTTACGAGGATATT
GCCATCATCATGGATTGCCCTGTGGGTACCGTAAGATCTCGTATCTTCCGCGCCCGTGAAGCAATCGATAAAAAACTCCA
GCCATTACTGGAAGAGTAA

Upstream 100 bases:

>100_bases
TAATTCTTAGAACTTTTTCAAAGCACGCTAGTCTACATAAGTGAATATGATTCGAGCGACTGAGAAATCAGCATTTTAGA
TTTGGGAGAAGTCGGCTCGG

Downstream 100 bases:

>100_bases
CACCCTTAAATTTAGACAGGTGAACAATGGATAAATTAGGTCAAGAATGGGTATCTGCCGCTGTCGATGGAGAGACAGAT
CTGCAGACTATGGCAGAACT

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSGQISDQQLVERVQRGDKNAFNLLVLKYQSKVVSLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYRIAV
NTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLSDEIKKVVFETLETLPEELRMAISLRELDGMSYEDI
AIIMDCPVGTVRSRIFRAREAIDKKLQPLLEE

Sequences:

>Translated_192_residues
MSGQISDQQLVERVQRGDKNAFNLLVLKYQSKVVSLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYRIAV
NTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLSDEIKKVVFETLETLPEELRMAISLRELDGMSYEDI
AIIMDCPVGTVRSRIFRAREAIDKKLQPLLEE
>Mature_191_residues
SGQISDQQLVERVQRGDKNAFNLLVLKYQSKVVSLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYRIAVN
TAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLSDEIKKVVFETLETLPEELRMAISLRELDGMSYEDIA
IIMDCPVGTVRSRIFRAREAIDKKLQPLLEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=190, Percent_Identity=72.6315789473684, Blast_Score=289, Evalue=8e-80,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21968; Mature: 21837

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQISDQQLVERVQRGDKNAFNLLVLKYQSKVVSLISRYVRNQADVTDVAQEAFIKAYR
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALPNFRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCH
RLMLSDEIKKVVFETLETLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
AIDKKLQPLLEE
HHHHHHHHHHCC
>Mature Secondary Structure 
SGQISDQQLVERVQRGDKNAFNLLVLKYQSKVVSLISRYVRNQADVTDVAQEAFIKAYR
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALPNFRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCH
RLMLSDEIKKVVFETLETLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
AIDKKLQPLLEE
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]