Click here to switch to the map view.

The map label for this gene is rseC [H]

Identifier: 117921468

GI number: 117921468

Start: 3635165

End: 3635638

Strand: Reverse

Name: rseC [H]

Synonym: Shewana3_3029

Alternate gene names: 117921468

Gene position: 3635638-3635165 (Counterclockwise)

Preceding gene: 117921469

Following gene: 117921467

Centisome position: 73.12

GC content: 49.16

Gene sequence:

>474_bases
ATGATGGAAGAAGTGGCGCGGGTTGTCGCCTGCGATAATCAAGGTTGGCTGACCGTCGAGGTAGAGCTCAAAAGTACCTG
TAAGAGCTGCAGCAGTAGCGAGTCTTGTGGTACGTCGGCGGTGGCTCAGGCTTTTTCGGCAAAGACACAACAATTCTCCA
TTCAAAGTGAACGAACCTGCGAGGTTGGCGAACTGCTCAAGCTCGGTCTACCAGAGAGCGTGATCCTGAAAGCGGCGGCC
TTAGTTTATTTGATGCCGCTGCTCGGATTATTTACTGGCGCCGTATTTGGCCAGTTTTTCGCAGGTTTGTTGGAAATCAA
TTCGGATCTCAGTGCGATAGCTTTTGCTGCCTTAGGCGCTATAGCCGCTTGGTTCTTTGGAAAGCACAAGGCAAAACAAC
TCGAAGTCGATTCGCAACCTGTCATTTTGGCTTATTTAGGCTCAGGGATCAGTTTAGAAAAATTACCCGTTTAA

Upstream 100 bases:

>100_bases
AAAAAGTGGGTAATGCCGAAGTAGTTGCCGTGGGTAAAGTGCCTACCGAAACCTTGGCCCGTATCGCGAAAAGTCTGATG
TTAGAATAAGGCCCCTTATC

Downstream 100 bases:

>100_bases
TTTCATGTTGTTATTGATTTTAATCTGGCAATAAACTTCCGCTGAGAGCCACATTTTCCGACTTAAAGAGAAGGATGAGT
GAATCTGATTGGTATTGAAA

Product: positive regulator of sigma(E), RseC/MucC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MMEEVARVVACDNQGWLTVEVELKSTCKSCSSSESCGTSAVAQAFSAKTQQFSIQSERTCEVGELLKLGLPESVILKAAA
LVYLMPLLGLFTGAVFGQFFAGLLEINSDLSAIAFAALGAIAAWFFGKHKAKQLEVDSQPVILAYLGSGISLEKLPV

Sequences:

>Translated_157_residues
MMEEVARVVACDNQGWLTVEVELKSTCKSCSSSESCGTSAVAQAFSAKTQQFSIQSERTCEVGELLKLGLPESVILKAAA
LVYLMPLLGLFTGAVFGQFFAGLLEINSDLSAIAFAALGAIAAWFFGKHKAKQLEVDSQPVILAYLGSGISLEKLPV
>Mature_157_residues
MMEEVARVVACDNQGWLTVEVELKSTCKSCSSSESCGTSAVAQAFSAKTQQFSIQSERTCEVGELLKLGLPESVILKAAA
LVYLMPLLGLFTGAVFGQFFAGLLEINSDLSAIAFAALGAIAAWFFGKHKAKQLEVDSQPVILAYLGSGISLEKLPV

Specific function: Seems to modulate the activity of rpoE (sigma-E) [H]

COG id: COG3086

COG function: function code T; Positive regulator of sigma E activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseC family [H]

Homologues:

Organism=Escherichia coli, GI1788923, Length=147, Percent_Identity=29.9319727891156, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007359 [H]

Pfam domain/function: PF04246 RseC_MucC [H]

EC number: NA

Molecular weight: Translated: 16653; Mature: 16653

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEEVARVVACDNQGWLTVEVELKSTCKSCSSSESCGTSAVAQAFSAKTQQFSIQSERTC
CHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
EVGELLKLGLPESVILKAAALVYLMPLLGLFTGAVFGQFFAGLLEINSDLSAIAFAALGA
CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IAAWFFGKHKAKQLEVDSQPVILAYLGSGISLEKLPV
HHHHHHHHCHHHHCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MMEEVARVVACDNQGWLTVEVELKSTCKSCSSSESCGTSAVAQAFSAKTQQFSIQSERTC
CHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
EVGELLKLGLPESVILKAAALVYLMPLLGLFTGAVFGQFFAGLLEINSDLSAIAFAALGA
CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IAAWFFGKHKAKQLEVDSQPVILAYLGSGISLEKLPV
HHHHHHHHCHHHHCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7889935; 9278503 [H]