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The map label for this gene is ypjD [H]

Identifier: 117921458

GI number: 117921458

Start: 3625517

End: 3626305

Strand: Direct

Name: ypjD [H]

Synonym: Shewana3_3019

Alternate gene names: 117921458

Gene position: 3625517-3626305 (Clockwise)

Preceding gene: 117921446

Following gene: 117921459

Centisome position: 72.92

GC content: 47.02

Gene sequence:

>789_bases
ATGGTCATTTTTTCTGCCTCAGCCATGTTTTTTTATTGCATCGCATTGGTATTAGTGACAAGTCGACTGTTCCATCCTGA
AGGTCCTAATCGTAAGGCCGTTGCCGGTGTCGCCGCCATCGCCGTGATTTTGCACGCTGCCGCCCTTTCTCAAGCGATTT
TTACGACCGATGGACAAAACTTCAGCCTCACTAATGTGATCTCCTTAGTGAACTGGATCATCGCCTTCACCTTTACCGTG
ATGATGTTTAGGCTAAAAGTGATTGTGGTTGTGCCCGTGGTTTACGCCTGTTCTGTGCTCTCTGTAGCCCTACTCTGGTT
ATTGCCGCCTAAGTTTATTACTCACTTTGAGCTGTACCCTGAGGTCTTAGCCCACGTAGTGCTCTCTCTTATGGCATACA
GCGCCCTGATGATCGCCGCCCTGTACGCGATTCAGCTAGCGATGATCCAAAATAAACTCAAGAAGAAACAATTAATGCTA
AGCCCAGGCATTCCGCCGCTGATGACGGTAGAAAAACAGCTCTATCATCTTGTGATTATTGGGGTGATTTTACTGAGTTT
ATCCCTCGCCACTGGCTTTATCTTCCTCGATGATATGTTTGCCGATGGCAAAGGCCATAAGGCGATTCTGTCTATCATCG
CGTGGTTTGTGTACATCGCCATGTTATGGCAGCAGTATTGGGTTGGCTGTAAAATTCGCACCGCGGTCATTTACACCTTA
ACCGGCGCGACCTTGTTATCCTTAGCCTATTTTGGCGCTCGGATTGTCAAAGAGTTAATTCTTAGTTAA

Upstream 100 bases:

>100_bases
ACTGCCCATTTGCCGACGGCTCATGTTATTCTAGACAAAATATTGATCTGTATGCCCCGTTTTCAAGGCACCATTAACAA
CACGAATAGGTTAATTACCC

Downstream 100 bases:

>100_bases
TAATTTCAAGTCAGCTTAGGCGCTAATTCCCTGAGCTGACTTGACACCCTGTTTATTTCTCGGTATCAACTTAACCTTAT
CGGCCTGATTGGAGCCTATT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MVIFSASAMFFYCIALVLVTSRLFHPEGPNRKAVAGVAAIAVILHAAALSQAIFTTDGQNFSLTNVISLVNWIIAFTFTV
MMFRLKVIVVVPVVYACSVLSVALLWLLPPKFITHFELYPEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLML
SPGIPPLMTVEKQLYHLVIIGVILLSLSLATGFIFLDDMFADGKGHKAILSIIAWFVYIAMLWQQYWVGCKIRTAVIYTL
TGATLLSLAYFGARIVKELILS

Sequences:

>Translated_262_residues
MVIFSASAMFFYCIALVLVTSRLFHPEGPNRKAVAGVAAIAVILHAAALSQAIFTTDGQNFSLTNVISLVNWIIAFTFTV
MMFRLKVIVVVPVVYACSVLSVALLWLLPPKFITHFELYPEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLML
SPGIPPLMTVEKQLYHLVIIGVILLSLSLATGFIFLDDMFADGKGHKAILSIIAWFVYIAMLWQQYWVGCKIRTAVIYTL
TGATLLSLAYFGARIVKELILS
>Mature_262_residues
MVIFSASAMFFYCIALVLVTSRLFHPEGPNRKAVAGVAAIAVILHAAALSQAIFTTDGQNFSLTNVISLVNWIIAFTFTV
MMFRLKVIVVVPVVYACSVLSVALLWLLPPKFITHFELYPEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLML
SPGIPPLMTVEKQLYHLVIIGVILLSLSLATGFIFLDDMFADGKGHKAILSIIAWFVYIAMLWQQYWVGCKIRTAVIYTL
TGATLLSLAYFGARIVKELILS

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=262, Percent_Identity=41.6030534351145, Blast_Score=187, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28977; Mature: 28977

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIFSASAMFFYCIALVLVTSRLFHPEGPNRKAVAGVAAIAVILHAAALSQAIFTTDGQN
CEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FSLTNVISLVNWIIAFTFTVMMFRLKVIVVVPVVYACSVLSVALLWLLPPKFITHFELYP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLMLSPGIPPLMTVEKQLYHLVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
GVILLSLSLATGFIFLDDMFADGKGHKAILSIIAWFVYIAMLWQQYWVGCKIRTAVIYTL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
TGATLLSLAYFGARIVKELILS
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]