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The map label for this gene is yfjD [H]

Identifier: 117921459

GI number: 117921459

Start: 3626407

End: 3627678

Strand: Direct

Name: yfjD [H]

Synonym: Shewana3_3020

Alternate gene names: 117921459

Gene position: 3626407-3627678 (Clockwise)

Preceding gene: 117921458

Following gene: 117921472

Centisome position: 72.93

GC content: 47.64

Gene sequence:

>1272_bases
TTGGACGCTATATCGACAAGCGCACTCCTCATTTTCTTACTAGTGCTTATCCTTTGTTCTGCCTACTTTTCAGGTTCTGA
AACCGCCATGATGACCCTTAACCGCTATCGGTTAAGGCATCTCGCCTCAAACGGCCATAAAGGTGCGATACGCGCCCTCA
AGTTACTCGAACGTCCTGACCGCTTAATTGGCTTGATTCTGATAGGTAATAACCTCGTTAATATTCTCGCCTCCGCCATA
GCGACCATTATTGGAATGCGCCTTTGGGGCGATTTAGGCGTCGCGGTCGCCACAGGTGTGCTGACCTTAGTCGTATTAGT
CTTTGCCGAAGTCACCCCCAAAACTATCGCCGCCTTGAACCCTGAACGCATTGCCTTCCCATCGAGTATTTTACTCATTG
GTCTATCAACGATTTTTGCCTATGTCGTCACCAGCGTGAACTGGATAACCACAGGCATACTGCGCCTCTTTGGCATCAAG
ACCATCAGCAGTAGCGATGCACTGAGCCAAGAAGAGTTAAGGACGGTTGTACATGAGGCTGGCGCCTTGATCCCCCAACG
CCACCAGGAAATGCTGTTATCGATTCTCGATTTAGAAAAAGTGACCGTTGAAGACATCATGGTGCCGCGCTCGGATATCT
ACGCGATTAACGTCAACGATGACTTTAAATTTATCAATCGCCAAGTGATCCAAAGCCCACATACTCGAGTGTTGGTATAC
CGCGATACCATTGACGATGCCGTCGGCTTTATTCATCTGCGTGACGCACTGCGCCTGCAATCAAAGGAGCAGTTCAGTAA
ATCCTCATTGCTACGTGCGGTAAAAGAACTCTACTTTATTCCCGAAGGAACACCGCTCAATGTGCAATTAGCCAACTTTC
AGCACAATAAAGAGCGCATCGGCCTAGTGGTCGATGAATATGGTGATATTCAAGGATTGGTGACACTCGAAGATATTCTC
GAAGAAATTGTCGGCGACTTCACTACCTCTATGTTGGCCACACCGAGTGAAGATATTACTGCCCAGCAGGATGGAAGCTA
CTTAGTCGATGCCAGTATCACTATCCGTGATTTGAATAAAGAAATGAAATGGGATTTCCCAACCGATGGCCCTAAAACCC
TCAATGGCTTGATCTTAGAGTATTTAGAGGATATCCCCGCCGAGAACACTAGCCTTCGCCTAGCGGGTTACCCATTAGAA
GTGATTGAAGTCGCGGATAATATGGTCAAAACAGTACGCATCATTCCGCAGCATTATCAGTCGCCACGCTAA

Upstream 100 bases:

>100_bases
AATTTCAAGTCAGCTTAGGCGCTAATTCCCTGAGCTGACTTGACACCCTGTTTATTTCTCGGTATCAACTTAACCTTATC
GGCCTGATTGGAGCCTATTT

Downstream 100 bases:

>100_bases
TTTTTGTAGATAAAAAATCGGCTGGTTCCAAATGGAATCAGCCGATTTCCTTCTCCCCCAAGAAATTATTTAACGCTTTG
CGTCTTTAGACGTGCTTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MDAISTSALLIFLLVLILCSAYFSGSETAMMTLNRYRLRHLASNGHKGAIRALKLLERPDRLIGLILIGNNLVNILASAI
ATIIGMRLWGDLGVAVATGVLTLVVLVFAEVTPKTIAALNPERIAFPSSILLIGLSTIFAYVVTSVNWITTGILRLFGIK
TISSSDALSQEELRTVVHEAGALIPQRHQEMLLSILDLEKVTVEDIMVPRSDIYAINVNDDFKFINRQVIQSPHTRVLVY
RDTIDDAVGFIHLRDALRLQSKEQFSKSSLLRAVKELYFIPEGTPLNVQLANFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMLATPSEDITAQQDGSYLVDASITIRDLNKEMKWDFPTDGPKTLNGLILEYLEDIPAENTSLRLAGYPLE
VIEVADNMVKTVRIIPQHYQSPR

Sequences:

>Translated_423_residues
MDAISTSALLIFLLVLILCSAYFSGSETAMMTLNRYRLRHLASNGHKGAIRALKLLERPDRLIGLILIGNNLVNILASAI
ATIIGMRLWGDLGVAVATGVLTLVVLVFAEVTPKTIAALNPERIAFPSSILLIGLSTIFAYVVTSVNWITTGILRLFGIK
TISSSDALSQEELRTVVHEAGALIPQRHQEMLLSILDLEKVTVEDIMVPRSDIYAINVNDDFKFINRQVIQSPHTRVLVY
RDTIDDAVGFIHLRDALRLQSKEQFSKSSLLRAVKELYFIPEGTPLNVQLANFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMLATPSEDITAQQDGSYLVDASITIRDLNKEMKWDFPTDGPKTLNGLILEYLEDIPAENTSLRLAGYPLE
VIEVADNMVKTVRIIPQHYQSPR
>Mature_423_residues
MDAISTSALLIFLLVLILCSAYFSGSETAMMTLNRYRLRHLASNGHKGAIRALKLLERPDRLIGLILIGNNLVNILASAI
ATIIGMRLWGDLGVAVATGVLTLVVLVFAEVTPKTIAALNPERIAFPSSILLIGLSTIFAYVVTSVNWITTGILRLFGIK
TISSSDALSQEELRTVVHEAGALIPQRHQEMLLSILDLEKVTVEDIMVPRSDIYAINVNDDFKFINRQVIQSPHTRVLVY
RDTIDDAVGFIHLRDALRLQSKEQFSKSSLLRAVKELYFIPEGTPLNVQLANFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMLATPSEDITAQQDGSYLVDASITIRDLNKEMKWDFPTDGPKTLNGLILEYLEDIPAENTSLRLAGYPLE
VIEVADNMVKTVRIIPQHYQSPR

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=393, Percent_Identity=24.4274809160305, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI94681046, Length=319, Percent_Identity=24.4514106583072, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=59.2964824120603, Blast_Score=493, Evalue=1e-141,
Organism=Escherichia coli, GI1790664, Length=421, Percent_Identity=27.0783847980998, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI87082033, Length=273, Percent_Identity=28.9377289377289, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786879, Length=258, Percent_Identity=27.5193798449612, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788119, Length=272, Percent_Identity=25.3676470588235, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46965; Mature: 46965

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAISTSALLIFLLVLILCSAYFSGSETAMMTLNRYRLRHLASNGHKGAIRALKLLERPD
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RLIGLILIGNNLVNILASAIATIIGMRLWGDLGVAVATGVLTLVVLVFAEVTPKTIAALN
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAFPSSILLIGLSTIFAYVVTSVNWITTGILRLFGIKTISSSDALSQEELRTVVHEA
CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALIPQRHQEMLLSILDLEKVTVEDIMVPRSDIYAINVNDDFKFINRQVIQSPHTRVLVY
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFIHLRDALRLQSKEQFSKSSLLRAVKELYFIPEGTPLNVQLANFQHNKERI
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMLATPSEDITAQQDGSYLVDASITIRDLNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCC
EMKWDFPTDGPKTLNGLILEYLEDIPAENTSLRLAGYPLEVIEVADNMVKTVRIIPQHYQ
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
SPR
CCC
>Mature Secondary Structure
MDAISTSALLIFLLVLILCSAYFSGSETAMMTLNRYRLRHLASNGHKGAIRALKLLERPD
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RLIGLILIGNNLVNILASAIATIIGMRLWGDLGVAVATGVLTLVVLVFAEVTPKTIAALN
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAFPSSILLIGLSTIFAYVVTSVNWITTGILRLFGIKTISSSDALSQEELRTVVHEA
CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALIPQRHQEMLLSILDLEKVTVEDIMVPRSDIYAINVNDDFKFINRQVIQSPHTRVLVY
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFIHLRDALRLQSKEQFSKSSLLRAVKELYFIPEGTPLNVQLANFQHNKERI
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMLATPSEDITAQQDGSYLVDASITIRDLNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCC
EMKWDFPTDGPKTLNGLILEYLEDIPAENTSLRLAGYPLEVIEVADNMVKTVRIIPQHYQ
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
SPR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]