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The map label for this gene is tdhA [H]

Identifier: 117921303

GI number: 117921303

Start: 3421055

End: 3423268

Strand: Reverse

Name: tdhA [H]

Synonym: Shewana3_2862

Alternate gene names: 117921303

Gene position: 3423268-3421055 (Counterclockwise)

Preceding gene: 117921305

Following gene: 117921302

Centisome position: 68.85

GC content: 48.87

Gene sequence:

>2214_bases
ATGGGATATCAACCTAAGAGCAGGATATCAAAAGCAATCATGGGCTGTTTGGGCTTAAGCGTATTACCCGCGTTGCCACT
CAATGCCAAGGAAGTATTGGGAGCGCCTAAGGTCGAGCCAATCGAGATTTTACAAGTACATGGCCAGCAATACCGCCGAG
CGACCACAATGACTAAGCCGGGCGAGGCGATCATCTCGATGGAGCAGATTGAAGAGATGCAAGCGACCACATTTGCTGAA
GTCATCGATGATATGGCTGGTGCCCATATTGATGGCGGGACTCGCAGTGGTGGCGAGCGCATCAACCTGTGGGGATTTGG
CGAAACCGAAGATTTTAATATTTATGTCGATAACGCCCCCGTGGGATTTGAGCAGTATCGTTATGGCTCGTTCTTCTTAG
ATCCCGATTTAATCAAGCGAGTCGAAGTGATTAAAGGGGCCCACGATGTCCGCTCGGGTAATGGCGGATTTGGCGGCTCC
ATGTATGTTGTGACTAAATCTGCCGATGATTTTTTAAATTACAATCAAAACGTTGGTGCCCGAATCAAAGCCAGTTACGC
CAGTAATAACGACGCCCAAAGCTACACAGGAACCCTTTATGGACGAGCTAATAAACAACTTTCAGGTTTATTGCATGTCA
CTCGCCGTGATGCGGGGGATGTGACGCTTGCCAATGGTGACGAATTTGAATACTCAGGTTATGAGCAAAATAATTACCTC
GGCAAACTGGATTACGAGCAGGGCGACCATCAACTCATGCTGAGCCTGACCCATTATCTCGACGAAGGGCGTAAGCCATG
GGCCAATCGTCGTGGACCTATGCCCGCAATTTCTGACTACAACATCCGTAAATATGGCTCCTATGAACAGGCGCTCTATG
CCACCACGGCCTACAACACCTATGAAGACAATACTTGGTCGGCGAATTATCGCTATTCACCGAGTAATCCTTTAATTGAT
ACCCAGATAGTGATTTCTCATTCTGCCAATGCGCGTCACTGGATCAGGCCGCCAATCGCGTGGGAAAAGATGACCGTCTC
AGTCGGCAATTTCGGCCATGAATCTTGGTTGGATTACAAGCGTGACTACATTGACATCAACAACTTAAGTGTTATTGGGG
ATCATGAGATCACCACGGGGTTGCAGTTCCGCAGTCTCGATAGGGATTCAATGGTGTTTAACAAAAGTTATGAGAAAAAT
CCCGAGAAAAACTACGGTTGGTACACCCCTTACTATCAGCCCGAAGGGCGTCAGGATACCTATGCAGTGTATTTGCGCGA
TGCGATTAGTGTGACAGATGAGCTGACTATTACTCCTTCGCTACGCTATGACTTTATCTACAGCATTGGCCGTCCCAACA
TTGCCCCCGATTACAACGATATCGAGGCAGGGCACGACTACAGCTCGACCCACCATTCGGGCTTTTCACCGCGATTGGGA
ATCGACTACCAGTTAACTGCGAATACTCGAGTGAATTTCGATTACGCCTACAGTTTACAAGCGCCAGTGGTCGATGAAAT
CTATGCGGTGCAATACGCCAAGGCGAGCATTACCGGCACGAGTCGAGATATCGATGTAGAGCGTCTGCACGCCTTTAAAC
TGGGCTTGATGACACAGCAAATCAGCCTTTTTGCCGCCCAAGATACGCTTTCAACCCAAGTGACCCTCTTTGCTAACTTA
GGGCGGGATGATATTGCCCAGCGCCGCGGGGCAAAGTCCGACCCCAATCAAGTGATTCAAAGTGGTTACACCAATCTTGA
CGGCTATGAGATCTACGGCGCCGATCTCGAGTCCCAATACCGTTATCAGGATTTCTTCAGTGACTTAGCCGTTTCTTGGT
TACAGGGCGAACACAGGGGATCGCTCAGAGACAGCCAAGGCGAGGACGAATACCTTGCCAATATTGCGCCGCTGGATATT
CGTCTGCGTGTGGGCATGTACATTACCGATGACATTTCAGTCGCTTGGCAAGGTACTTGGTACGATGCGCAGGATAATGT
GCCTCAGGGGGATATCTTTAACGCTGAGTCCCCAAGTGAGAATTACTTCTTACAAAATATATATTTAGCCTACGAGCCTC
AAGAAACACTGAAAGGGCTAAGTGTGCGCTTAATGGCAAAAAATCTGACGAACCAGCAAGTGACGCCGTTTCTGTCGGAT
GGCATCCCCGCGCCGGGGCGAGATGTCAGACTCAGTTTAGCTTATGAATTTTAA

Upstream 100 bases:

>100_bases
GTGATTTACATGTAAAGCTAGGTGAGAATTATTCTCATCTTTGGCTTTGATGCCTATAATGCCGCCCTATTTTTTACACT
ATGTAACAGGGGATGGGGAG

Downstream 100 bases:

>100_bases
GGATTAAATGGCAATTTCAAGGATGGATAAACAGATAACTCATATAAAAAATAGGGTTATCTTGCCTTCCCCCCTGCCGT
GAAAAGCCAATTTATGGCAT

Product: TonB-dependent heme/hemoglobin receptor family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 737; Mature: 736

Protein sequence:

>737_residues
MGYQPKSRISKAIMGCLGLSVLPALPLNAKEVLGAPKVEPIEILQVHGQQYRRATTMTKPGEAIISMEQIEEMQATTFAE
VIDDMAGAHIDGGTRSGGERINLWGFGETEDFNIYVDNAPVGFEQYRYGSFFLDPDLIKRVEVIKGAHDVRSGNGGFGGS
MYVVTKSADDFLNYNQNVGARIKASYASNNDAQSYTGTLYGRANKQLSGLLHVTRRDAGDVTLANGDEFEYSGYEQNNYL
GKLDYEQGDHQLMLSLTHYLDEGRKPWANRRGPMPAISDYNIRKYGSYEQALYATTAYNTYEDNTWSANYRYSPSNPLID
TQIVISHSANARHWIRPPIAWEKMTVSVGNFGHESWLDYKRDYIDINNLSVIGDHEITTGLQFRSLDRDSMVFNKSYEKN
PEKNYGWYTPYYQPEGRQDTYAVYLRDAISVTDELTITPSLRYDFIYSIGRPNIAPDYNDIEAGHDYSSTHHSGFSPRLG
IDYQLTANTRVNFDYAYSLQAPVVDEIYAVQYAKASITGTSRDIDVERLHAFKLGLMTQQISLFAAQDTLSTQVTLFANL
GRDDIAQRRGAKSDPNQVIQSGYTNLDGYEIYGADLESQYRYQDFFSDLAVSWLQGEHRGSLRDSQGEDEYLANIAPLDI
RLRVGMYITDDISVAWQGTWYDAQDNVPQGDIFNAESPSENYFLQNIYLAYEPQETLKGLSVRLMAKNLTNQQVTPFLSD
GIPAPGRDVRLSLAYEF

Sequences:

>Translated_737_residues
MGYQPKSRISKAIMGCLGLSVLPALPLNAKEVLGAPKVEPIEILQVHGQQYRRATTMTKPGEAIISMEQIEEMQATTFAE
VIDDMAGAHIDGGTRSGGERINLWGFGETEDFNIYVDNAPVGFEQYRYGSFFLDPDLIKRVEVIKGAHDVRSGNGGFGGS
MYVVTKSADDFLNYNQNVGARIKASYASNNDAQSYTGTLYGRANKQLSGLLHVTRRDAGDVTLANGDEFEYSGYEQNNYL
GKLDYEQGDHQLMLSLTHYLDEGRKPWANRRGPMPAISDYNIRKYGSYEQALYATTAYNTYEDNTWSANYRYSPSNPLID
TQIVISHSANARHWIRPPIAWEKMTVSVGNFGHESWLDYKRDYIDINNLSVIGDHEITTGLQFRSLDRDSMVFNKSYEKN
PEKNYGWYTPYYQPEGRQDTYAVYLRDAISVTDELTITPSLRYDFIYSIGRPNIAPDYNDIEAGHDYSSTHHSGFSPRLG
IDYQLTANTRVNFDYAYSLQAPVVDEIYAVQYAKASITGTSRDIDVERLHAFKLGLMTQQISLFAAQDTLSTQVTLFANL
GRDDIAQRRGAKSDPNQVIQSGYTNLDGYEIYGADLESQYRYQDFFSDLAVSWLQGEHRGSLRDSQGEDEYLANIAPLDI
RLRVGMYITDDISVAWQGTWYDAQDNVPQGDIFNAESPSENYFLQNIYLAYEPQETLKGLSVRLMAKNLTNQQVTPFLSD
GIPAPGRDVRLSLAYEF
>Mature_736_residues
GYQPKSRISKAIMGCLGLSVLPALPLNAKEVLGAPKVEPIEILQVHGQQYRRATTMTKPGEAIISMEQIEEMQATTFAEV
IDDMAGAHIDGGTRSGGERINLWGFGETEDFNIYVDNAPVGFEQYRYGSFFLDPDLIKRVEVIKGAHDVRSGNGGFGGSM
YVVTKSADDFLNYNQNVGARIKASYASNNDAQSYTGTLYGRANKQLSGLLHVTRRDAGDVTLANGDEFEYSGYEQNNYLG
KLDYEQGDHQLMLSLTHYLDEGRKPWANRRGPMPAISDYNIRKYGSYEQALYATTAYNTYEDNTWSANYRYSPSNPLIDT
QIVISHSANARHWIRPPIAWEKMTVSVGNFGHESWLDYKRDYIDINNLSVIGDHEITTGLQFRSLDRDSMVFNKSYEKNP
EKNYGWYTPYYQPEGRQDTYAVYLRDAISVTDELTITPSLRYDFIYSIGRPNIAPDYNDIEAGHDYSSTHHSGFSPRLGI
DYQLTANTRVNFDYAYSLQAPVVDEIYAVQYAKASITGTSRDIDVERLHAFKLGLMTQQISLFAAQDTLSTQVTLFANLG
RDDIAQRRGAKSDPNQVIQSGYTNLDGYEIYGADLESQYRYQDFFSDLAVSWLQGEHRGSLRDSQGEDEYLANIAPLDIR
LRVGMYITDDISVAWQGTWYDAQDNVPQGDIFNAESPSENYFLQNIYLAYEPQETLKGLSVRLMAKNLTNQQVTPFLSDG
IPAPGRDVRLSLAYEF

Specific function: Heme receptor [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR011276
- InterPro:   IPR010949 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 83150; Mature: 83019

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00539 PYROKININ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYQPKSRISKAIMGCLGLSVLPALPLNAKEVLGAPKVEPIEILQVHGQQYRRATTMTKP
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCC
GEAIISMEQIEEMQATTFAEVIDDMAGAHIDGGTRSGGERINLWGFGETEDFNIYVDNAP
CHHHEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCCEEEEECCCC
VGFEQYRYGSFFLDPDLIKRVEVIKGAHDVRSGNGGFGGSMYVVTKSADDFLNYNQNVGA
CCHHHEECCCEEECHHHHHHHHHHHCHHHCCCCCCCCCCEEEEEEECCHHHHCCCCCCCC
RIKASYASNNDAQSYTGTLYGRANKQLSGLLHVTRRDAGDVTLANGDEFEYSGYEQNNYL
EEEEEECCCCCCCCEEEEEEECCCHHHHHHHEEEECCCCCEEECCCCCCEECCCCCCCCE
GKLDYEQGDHQLMLSLTHYLDEGRKPWANRRGPMPAISDYNIRKYGSYEQALYATTAYNT
EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
YEDNTWSANYRYSPSNPLIDTQIVISHSANARHWIRPPIAWEKMTVSVGNFGHESWLDYK
CCCCCCCCEEEECCCCCCEEEEEEEECCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHH
RDYIDINNLSVIGDHEITTGLQFRSLDRDSMVFNKSYEKNPEKNYGWYTPYYQPEGRQDT
HCEEEECCEEEEECCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
YAVYLRDAISVTDELTITPSLRYDFIYSIGRPNIAPDYNDIEAGHDYSSTHHSGFSPRLG
EEEEEEHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
IDYQLTANTRVNFDYAYSLQAPVVDEIYAVQYAKASITGTSRDIDVERLHAFKLGLMTQQ
CEEEEECCCEEEEEEEEEECCCCHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
ISLFAAQDTLSTQVTLFANLGRDDIAQRRGAKSDPNQVIQSGYTNLDGYEIYGADLESQY
HEEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHH
RYQDFFSDLAVSWLQGEHRGSLRDSQGEDEYLANIAPLDIRLRVGMYITDDISVAWQGTW
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEECCCEEEEEEEE
YDAQDNVPQGDIFNAESPSENYFLQNIYLAYEPQETLKGLSVRLMAKNLTNQQVTPFLSD
ECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHCCCEEEEEECCCCCCCCCCHHHC
GIPAPGRDVRLSLAYEF
CCCCCCCCEEEEEEECC
>Mature Secondary Structure 
GYQPKSRISKAIMGCLGLSVLPALPLNAKEVLGAPKVEPIEILQVHGQQYRRATTMTKP
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCC
GEAIISMEQIEEMQATTFAEVIDDMAGAHIDGGTRSGGERINLWGFGETEDFNIYVDNAP
CHHHEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCCEEEEECCCC
VGFEQYRYGSFFLDPDLIKRVEVIKGAHDVRSGNGGFGGSMYVVTKSADDFLNYNQNVGA
CCHHHEECCCEEECHHHHHHHHHHHCHHHCCCCCCCCCCEEEEEEECCHHHHCCCCCCCC
RIKASYASNNDAQSYTGTLYGRANKQLSGLLHVTRRDAGDVTLANGDEFEYSGYEQNNYL
EEEEEECCCCCCCCEEEEEEECCCHHHHHHHEEEECCCCCEEECCCCCCEECCCCCCCCE
GKLDYEQGDHQLMLSLTHYLDEGRKPWANRRGPMPAISDYNIRKYGSYEQALYATTAYNT
EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
YEDNTWSANYRYSPSNPLIDTQIVISHSANARHWIRPPIAWEKMTVSVGNFGHESWLDYK
CCCCCCCCEEEECCCCCCEEEEEEEECCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHH
RDYIDINNLSVIGDHEITTGLQFRSLDRDSMVFNKSYEKNPEKNYGWYTPYYQPEGRQDT
HCEEEECCEEEEECCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
YAVYLRDAISVTDELTITPSLRYDFIYSIGRPNIAPDYNDIEAGHDYSSTHHSGFSPRLG
EEEEEEHHHCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
IDYQLTANTRVNFDYAYSLQAPVVDEIYAVQYAKASITGTSRDIDVERLHAFKLGLMTQQ
CEEEEECCCEEEEEEEEEECCCCHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
ISLFAAQDTLSTQVTLFANLGRDDIAQRRGAKSDPNQVIQSGYTNLDGYEIYGADLESQY
HEEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHH
RYQDFFSDLAVSWLQGEHRGSLRDSQGEDEYLANIAPLDIRLRVGMYITDDISVAWQGTW
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEECCCEEEEEEEE
YDAQDNVPQGDIFNAESPSENYFLQNIYLAYEPQETLKGLSVRLMAKNLTNQQVTPFLSD
ECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHCCCEEEEEECCCCCCCCCCHHHC
GIPAPGRDVRLSLAYEF
CCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9712775 [H]