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The map label for this gene is ycfQ [H]

Identifier: 117921305

GI number: 117921305

Start: 3424269

End: 3424880

Strand: Reverse

Name: ycfQ [H]

Synonym: Shewana3_2864

Alternate gene names: 117921305

Gene position: 3424880-3424269 (Counterclockwise)

Preceding gene: 117921311

Following gene: 117921303

Centisome position: 68.88

GC content: 47.88

Gene sequence:

>612_bases
ATGGCACGCAGTTGTAATTTTGATAGACAGGAAAAGCTTATCCAGGCGATGGAGCTGTTTTGGCAGAAGGGATTTGCCGA
GACCTCGATTGCCGATCTGGTCGAACACTTAGGGATTAATCGCTTCAGCTTGTATAACAGTTTTGGTGATAAACAGAGCT
TGTACCGCGAATCCCTGCGCTTTTATCTCGACCATTATTCCTTCGGCGCGAAGGAGCAAATTCTGCACGCACAGGCTGGG
CTGAGTGAAATCTTGACCTATTTAGCGCGATTTGTGGCCTTGCAGCGTGAGCAAGAGTACGGCTGCTTTATGCAGAATGC
GGTGATGGAAAAATGCCTCGACGATGACTGCGTGCAGCAGGAGTGCCAGCGTTTATTTGCCCAGTTGCTGACTAATTTCA
CCGATGTTTTACGCTACAGTCAGCTGCAGGGCGAGTTGCCTCAATCGGTTCAACCTGAGTCGCTCGCGGCTTTTTTAGTG
CTTCAATTACAAGGGATTAGAGTGCTAGGCAAAGCGAAGGAGTACGTCCTGTTGGATAATGCATTTAAGGTTTTAAGAGA
ATACCTTACGAGTCTCGCATTAACGCCACTTAAACCCGTCGATGTGAAATAG

Upstream 100 bases:

>100_bases
TCGGTTAGGATAGAATTTACGCCATATCTAAACGGTCAGTCAAGAATGTTTTTACCCCGTGATATTCCGTTTAATGCAGG
CATCAATCTAGGTTTGGACC

Downstream 100 bases:

>100_bases
CCCTTAAGCAAAACCGAAAAGCATGAGGCCAAGTGAATGCTTGGCCTCGTCAACAGCAAAAACTAAAAGTCTAATTCGAG
GGCGAAGCACAAGTAGGCCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MARSCNFDRQEKLIQAMELFWQKGFAETSIADLVEHLGINRFSLYNSFGDKQSLYRESLRFYLDHYSFGAKEQILHAQAG
LSEILTYLARFVALQREQEYGCFMQNAVMEKCLDDDCVQQECQRLFAQLLTNFTDVLRYSQLQGELPQSVQPESLAAFLV
LQLQGIRVLGKAKEYVLLDNAFKVLREYLTSLALTPLKPVDVK

Sequences:

>Translated_203_residues
MARSCNFDRQEKLIQAMELFWQKGFAETSIADLVEHLGINRFSLYNSFGDKQSLYRESLRFYLDHYSFGAKEQILHAQAG
LSEILTYLARFVALQREQEYGCFMQNAVMEKCLDDDCVQQECQRLFAQLLTNFTDVLRYSQLQGELPQSVQPESLAAFLV
LQLQGIRVLGKAKEYVLLDNAFKVLREYLTSLALTPLKPVDVK
>Mature_202_residues
ARSCNFDRQEKLIQAMELFWQKGFAETSIADLVEHLGINRFSLYNSFGDKQSLYRESLRFYLDHYSFGAKEQILHAQAGL
SEILTYLARFVALQREQEYGCFMQNAVMEKCLDDDCVQQECQRLFAQLLTNFTDVLRYSQLQGELPQSVQPESLAAFLVL
QLQGIRVLGKAKEYVLLDNAFKVLREYLTSLALTPLKPVDVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=193, Percent_Identity=30.0518134715026, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23425; Mature: 23294

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50977 HTH_TETR_2 ; PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSCNFDRQEKLIQAMELFWQKGFAETSIADLVEHLGINRFSLYNSFGDKQSLYRESLR
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
FYLDHYSFGAKEQILHAQAGLSEILTYLARFVALQREQEYGCFMQNAVMEKCLDDDCVQQ
HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ECQRLFAQLLTNFTDVLRYSQLQGELPQSVQPESLAAFLVLQLQGIRVLGKAKEYVLLDN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFKVLREYLTSLALTPLKPVDVK
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ARSCNFDRQEKLIQAMELFWQKGFAETSIADLVEHLGINRFSLYNSFGDKQSLYRESLR
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
FYLDHYSFGAKEQILHAQAGLSEILTYLARFVALQREQEYGCFMQNAVMEKCLDDDCVQQ
HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ECQRLFAQLLTNFTDVLRYSQLQGELPQSVQPESLAAFLVLQLQGIRVLGKAKEYVLLDN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFKVLREYLTSLALTPLKPVDVK
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]